| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2210428 | 75 (0.760) | 9 (0.100) | 5/148 | NT | 10.7% | coding (69/648 nt) | USA300HOU_RS11275 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2210445 | 81 (0.890) | coding (86/648 nt) | USA300HOU_RS11275 | hypothetical protein | |||||
Only 100 of 110 total aligned reads displayed.
AAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAA > USA300TCH1516_ALE/2210338‑2210518 | aaaTATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACA > 1:2795947‑M1/1‑91 (MQ=255) aaTATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAg < 1:111308/91‑1 (MQ=255) tatGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCGTCAAAATGATTATACAGGc < 1:2975792/91‑1 (MQ=255) gaggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCAt < 1:3203932/91‑1 (MQ=255) gaggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCAt > 1:1257829/1‑91 (MQ=255) gaggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCAt < 1:3833548/91‑1 (MQ=255) gaggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCAt > 1:4090099/1‑91 (MQ=255) aggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATg < 1:3527378/91‑1 (MQ=255) aggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATg < 1:3527572/91‑1 (MQ=255) aggagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATg < 1:1968590/91‑1 (MQ=255) gagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGat > 1:845520/1‑91 (MQ=255) gagTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGat < 1:476577/91‑1 (MQ=255) gtgtAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGatat > 1:3071974/1‑91 (MQ=255) gtgtAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGatat < 1:2625240/91‑1 (MQ=255) gtgtAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGatat < 1:191259/91‑1 (MQ=255) tAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTgc > 1:1905240/1‑91 (MQ=255) tttAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcct < 1:1762788‑M1/91‑19 (MQ=255) tttAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcct < 1:1762974‑M1/91‑19 (MQ=255) aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcctgtat < 1:3020407‑M1/91‑23 (MQ=255) aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcctgtat < 1:304109‑M1/91‑23 (MQ=255) aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCTCAtgtat < 1:2063078‑M2/91‑6 (MQ=255) aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCAtgtat > 1:3361219‑M2/1‑86 (MQ=255) gCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcctgtataa < 1:2205495‑M1/91‑25 (MQ=255) gCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcctgtataa < 1:2205549‑M1/91‑25 (MQ=255) gCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcctgtataa < 1:2102894‑M1/91‑25 (MQ=255) caacaaTCAGACGTCATTAGTGCTGCCAATAGATATATGGAATCGATTCATCAGAATGATTATACAtgcgcaatatcatggcctgtataat < 1:3317437‑M1/91‑26 (MQ=255) caacaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATc < 1:830324/91‑1 (MQ=255) aacaaTCATACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAtgcgcaatatcatggcctgtataatc < 1:189540‑M1/91‑27 (MQ=255) acaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgt < 1:1086833/91‑1 (MQ=255) acaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgt < 1:1948489/91‑1 (MQ=255) acaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgt > 1:3213000/1‑91 (MQ=255) aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGNCCANGATANTGCGCATGTATATCgtgt < 1:3319774/91‑1 (MQ=255) aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt < 1:1496440/91‑1 (MQ=255) aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt < 1:158883/91‑1 (MQ=255) aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt < 1:3565933/91‑1 (MQ=255) aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt < 1:1496153/91‑1 (MQ=255) aTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTc < 1:685846/91‑1 (MQ=255) tCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCa > 1:3438183/1‑91 (MQ=255) cAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCAc > 1:3576208/1‑91 (MQ=255) aGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACt > 1:3229803/1‑91 (MQ=255) aGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACt > 1:1457589/1‑91 (MQ=255) gACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTg > 1:3880820/1‑91 (MQ=255) aCGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGc > 1:2907190/1‑91 (MQ=255) gTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCtt < 1:803225/91‑1 (MQ=255) gTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCtt < 1:1275228/91‑1 (MQ=255) cATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTa > 1:1443769/1‑91 (MQ=255) ttAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGc < 1:1094303/91‑1 (MQ=255) ttAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGc < 1:579026/91‑1 (MQ=255) gTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTaa > 1:3047673/1‑91 (MQ=255) tgctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTaaa < 1:1036467/91‑1 (MQ=255) gctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaat < 1:473343/91‑1 (MQ=255) gctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaat > 1:987363/1‑91 (MQ=255) gctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaat > 1:2256090/1‑91 (MQ=255) ctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatc < 1:4002137/91‑1 (MQ=255) ctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatc < 1:4002242/91‑1 (MQ=255) tgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATTTCGTGTCACTGCTTTAGCTAaatca > 1:3870705/1‑91 (MQ=255) tgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatca > 1:2935195/1‑91 (MQ=255) tgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatca > 1:4030621/1‑91 (MQ=255) cAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatcaatc < 1:2953912/91‑1 (MQ=255) aaaaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCt < 1:3117330/91‑1 (MQ=255) aaaaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCt < 1:3117732/91‑1 (MQ=255) aaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGa > 1:597632/1‑91 (MQ=255) atatatGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGaa < 1:3438432/91‑1 (MQ=255) atatGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGaaaa < 1:2749798/91‑1 (MQ=255) atatGGAATCTATTCATCAAAATGATTATACAGGCCACGATATTGCGCATGCATATCGTGTCACTACTTTAGCTAAATCAATCGCCGaaaa > 1:3863429/1‑91 (MQ=255) atGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATg > 1:2934639/1‑91 (MQ=255) tGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGa > 1:671243/1‑91 (MQ=255) ggAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGaa < 1:3863959/91‑1 (MQ=255) ggAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGaa > 1:352699/1‑91 (MQ=255) gAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAg < 1:1405073/91‑1 (MQ=255) gAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAg < 1:1017645/91‑1 (MQ=255) aaTCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAgg < 1:1636008/91‑1 (MQ=255) aaTCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAgg < 1:1636009/91‑1 (MQ=255) tcatcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt > 1:1309452/1‑91 (MQ=255) tcatcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt > 1:1279899/1‑91 (MQ=255) tcatcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt < 1:103180/91‑1 (MQ=255) tcatcaAAATGATTATACAGGCCATGATACTGCGCATGTATATCGTGTCACTGGTTTGGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt < 1:3316263/91‑1 (MQ=255) catcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATg < 1:355190/91‑1 (MQ=255) catcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATg < 1:355222/91‑1 (MQ=255) catcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATg > 1:2219844/1‑91 (MQ=255) gATTATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtatgattgtt < 1:189540‑M2/91‑66 (MQ=255) gATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAg > 1:2832558/1‑91 (MQ=255) aTTATACAGGCCATGATATTGCGCAtgtataatcattctgatgaatcgattccatatatctattggcagcactaatgacgtctgattgttg < 1:3317437‑M2/91‑67 (MQ=255) ttATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgc < 1:2205549‑M2/91‑68 (MQ=255) ttATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgc < 1:2102894‑M2/91‑68 (MQ=255) ttATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgc < 1:2205495‑M2/91‑68 (MQ=255) ttATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGACACTTTCGTc > 1:3727975/1‑91 (MQ=255) ttATACAGGCCATGATATTGCGCATGTATATCGTGNCACTGCTTTAGCTAAATCAATCGCTGAAAATGNAGGTGTTAATGATACTTTAGTc > 1:2175237/1‑91 (MQ=255) ataCAtgcgcaatatcatggcctgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcat > 1:3361219‑M1/1‑5 (MQ=255) ataCAtgcgcaatatcatggcctgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcat > 1:3361554‑M1/1‑5 (MQ=255) ataCAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcat < 1:304109‑M2/91‑70 (MQ=255) ataCAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcat < 1:3020407‑M2/91‑70 (MQ=255) ataCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCAt > 1:3138292/1‑91 (MQ=255) ataCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCAt < 1:2531037/91‑1 (MQ=255) ataCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCAt > 1:2465983/1‑91 (MQ=255) aCAtgcgcaatatcatggcctgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcatta > 1:3641783‑M1/1‑3 (MQ=255) aCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTg < 1:1542806/91‑1 (MQ=255) aCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTg < 1:1542863/91‑1 (MQ=255) aGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcattaaa < 1:1762788‑M2/91‑74 (MQ=255) aGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcattaaa < 1:1762974‑M2/91‑74 (MQ=255) | AAATATGAGGAGTGTAACTTTAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAA > USA300TCH1516_ALE/2210338‑2210518 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |