BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2210428	75 (0.760)	9 (0.100)	5/148	NT	10.7%	coding (69/648 nt)	USA300HOU_RS11275	hypothetical protein
*	?	USA300TCH1516_ALE	= 2210445	81 (0.890)	9 (0.100)	5/148	NT	10.7%	coding (86/648 nt)	USA300HOU_RS11275	hypothetical protein

Only 100 of 103 total aligned reads displayed.

TAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCTTC  >  USA300TCH1516_ALE/2210358‑2210534

tAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCAtgt                                                                                        >  1:3641783‑M2/1‑88 (MQ=255)

  aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCTCAtgtat                                                                                      <  1:2063078‑M2/91‑6 (MQ=255)

  aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCAtgtat                                                                                      >  1:3361554‑M2/1‑86 (MQ=255)

  aTGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCAtgtat                                                                                      >  1:3361219‑M2/1‑86 (MQ=255)

     caacaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATc                                                                                   <  1:830324/91‑1 (MQ=255)

       acaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgt                                                                                 <  1:1086833/91‑1 (MQ=255)

       acaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgt                                                                                 <  1:1948489/91‑1 (MQ=255)

       acaaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgt                                                                                 >  1:3213000/1‑91 (MQ=255)

         aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGNCCANGATANTGCGCATGTATATCgtgt                                                                               <  1:3319774/91‑1 (MQ=255)

         aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt                                                                               <  1:158883/91‑1 (MQ=255)

         aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt                                                                               <  1:3565933/91‑1 (MQ=255)

         aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt                                                                               <  1:1496440/91‑1 (MQ=255)

         aaTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCgtgt                                                                               <  1:1496153/91‑1 (MQ=255)

          aTCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTc                                                                              <  1:685846/91‑1 (MQ=255)

           tCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCa                                                                             >  1:3438183/1‑91 (MQ=255)

            cAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCAc                                                                            >  1:3576208/1‑91 (MQ=255)

             aGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACt                                                                           >  1:3229803/1‑91 (MQ=255)

             aGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACt                                                                           >  1:1457589/1‑91 (MQ=255)

              gACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTg                                                                          >  1:3880820/1‑91 (MQ=255)

               aCGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGc                                                                         >  1:2907190/1‑91 (MQ=255)

                 gTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCtt                                                                       <  1:803225/91‑1 (MQ=255)

                 gTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCtt                                                                       <  1:1275228/91‑1 (MQ=255)

                   cATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTa                                                                     >  1:1443769/1‑91 (MQ=255)

                     ttAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGc                                                                   <  1:579026/91‑1 (MQ=255)

                     ttAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGc                                                                   <  1:1094303/91‑1 (MQ=255)

                        gTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTaa                                                                >  1:3047673/1‑91 (MQ=255)

                         tgctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTaaa                                                               <  1:1036467/91‑1 (MQ=255)

                          gctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaat                                                              <  1:473343/91‑1 (MQ=255)

                          gctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaat                                                              >  1:2256090/1‑91 (MQ=255)

                          gctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaat                                                              >  1:987363/1‑91 (MQ=255)

                           ctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatc                                                             <  1:4002137/91‑1 (MQ=255)

                           ctgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatc                                                             <  1:4002242/91‑1 (MQ=255)

                            tgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATTTCGTGTCACTGCTTTAGCTAaatca                                                            >  1:3870705/1‑91 (MQ=255)

                            tgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatca                                                            >  1:4030621/1‑91 (MQ=255)

                            tgcCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatca                                                            >  1:2935195/1‑91 (MQ=255)

                               cAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAaatcaatc                                                         <  1:2953912/91‑1 (MQ=255)

                                  aaaaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCt                                                      <  1:3117732/91‑1 (MQ=255)

                                  aaaaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCt                                                      <  1:3117330/91‑1 (MQ=255)

                                  aaaaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCt                                                      <  1:472036/91‑1 (MQ=255)

                                    aaTATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGa                                                    >  1:597632/1‑91 (MQ=255)

                                     atatatGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGaa                                                   <  1:3438432/91‑1 (MQ=255)

                                     atatatGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGaa                                                   <  1:1711196/91‑1 (MQ=255)

                                       atatGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGaaaa                                                 <  1:2749798/91‑1 (MQ=255)

                                       atatGGAATCTATTCATCAAAATGATTATACAGGCCACGATATTGCGCATGCATATCGTGTCACTACTTTAGCTAAATCAATCGCCGaaaa                                                 >  1:3863429/1‑91 (MQ=255)

                                       atatGGAATCTAGTCATCAAAATGATTATACAGGCCATGATATTGCGCATGCATCTCGTGTCACTGCTTTAGCTAAATCAATCGCTGaaaa                                                 >  1:3189105/1‑91 (MQ=255)

                                         atGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATg                                               >  1:2934639/1‑91 (MQ=255)

                                          tGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGa                                              >  1:671243/1‑91 (MQ=255)

                                           ggAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGaa                                             <  1:3863959/91‑1 (MQ=255)

                                            gAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAg                                            <  1:1405073/91‑1 (MQ=255)

                                            gAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAg                                            <  1:1017645/91‑1 (MQ=255)

                                             aaTCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAgg                                           <  1:1636009/91‑1 (MQ=255)

                                             aaTCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAgg                                           <  1:1636008/91‑1 (MQ=255)

                                                    tcatcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt                                    <  1:103180/91‑1 (MQ=255)

                                                    tcatcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt                                    >  1:1279899/1‑91 (MQ=255)

                                                    tcatcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt                                    >  1:1309452/1‑91 (MQ=255)

                                                    tcatcaAAATGATTATACAGGCCATGATACTGCGCATGTATATCGTGTCACTGGTTTGGCTAAATCAATCGCTGAAAATGAAGGTGTTAAt                                    <  1:3316263/91‑1 (MQ=255)

                                                     catcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATg                                   <  1:355222/91‑1 (MQ=255)

                                                     catcaAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATg                                   <  1:355190/91‑1 (MQ=255)

                                                        caAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATa                                >  1:2973031/1‑91 (MQ=255)

                                                              gATTATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtatgattgtt                          <  1:189540‑M2/91‑66 (MQ=255)

                                                              gATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAg                          >  1:2832558/1‑91 (MQ=255)

                                                              gATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAg                          <  1:2448893/91‑1 (MQ=255)

                                                               aTTATACAGGCCATGATATTGCGCAtgtataatcattctgatgaatcgattccatatatctattggcagcactaatgacgtctgattgttg                         <  1:3317437‑M2/91‑67 (MQ=255)

                                                                ttATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgc                        <  1:2102894‑M2/91‑68 (MQ=255)

                                                                ttATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgc                        <  1:2205495‑M2/91‑68 (MQ=255)

                                                                ttATACAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgc                        <  1:2205549‑M2/91‑68 (MQ=255)

                                                                ttATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTc                        >  1:1330021/1‑91 (MQ=255)

                                                                ttATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGACACTTTCGTc                        >  1:3727975/1‑91 (MQ=255)

                                                                ttATACAGGCCATGATATTGCGCATGTATATCGTGNCACTGCTTTAGCTAAATCAATCGCTGAAAATGNAGGTGTTAATGATACTTTAGTc                        >  1:2175237/1‑91 (MQ=255)

                                                                  ataCAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcat                      <  1:3020407‑M2/91‑70 (MQ=255)

                                                                  ataCAGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcat                      <  1:304109‑M2/91‑70 (MQ=255)

                                                                  ataCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCAt                      >  1:3138292/1‑91 (MQ=255)

                                                                  ataCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCAt                      >  1:2465983/1‑91 (MQ=255)

                                                                  ataCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCAt                      <  1:2531037/91‑1 (MQ=255)

                                                                    aCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTg                    <  1:1542863/91‑1 (MQ=255)

                                                                    aCAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTg                    <  1:1542806/91‑1 (MQ=255)

                                                                      aGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcattaaa                  <  1:1762788‑M2/91‑74 (MQ=255)

                                                                      aGGCCATGATATTGCGCAtgtataatcattttgatgaatagattccatatattttttggcagcactaatgacgtctgattgttgcattaaa                  <  1:1762974‑M2/91‑74 (MQ=255)

                                                                           aTGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGc             >  1:2445595/1‑91 (MQ=255)

                                                                            tGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCa            <  1:3568391/91‑1 (MQ=255)

                                                                            tGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCa            >  1:3554741/1‑91 (MQ=255)

                                                                            tGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTAGCa            >  1:3348216/1‑91 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           >  1:1753507/1‑91 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           <  1:3678149/91‑1 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           >  1:3987805/1‑91 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           >  1:3761043/1‑91 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           <  1:3677957/91‑1 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           <  1:3677866/91‑1 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           <  1:2464457/91‑1 (MQ=255)

                                                                             gATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCAt           >  1:3431222/1‑91 (MQ=255)

                                                                              atatTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATg          <  1:4009648/91‑1 (MQ=255)

                                                                               tatTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGt         <  1:1815743/91‑1 (MQ=255)

                                                                               tatTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGt         <  1:562219/91‑1 (MQ=255)

                                                                               tatTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGt         >  1:1079300/1‑91 (MQ=255)

                                                                                  tGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTg      <  1:2807804/91‑1 (MQ=255)

                                                                                   gcgcATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGc     >  1:284846/1‑91 (MQ=255)

                                                                                     gcATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCtt   <  1:1764813/91‑1 (MQ=255)

                                                                                     gcATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCtt   >  1:3958289/1‑91 (MQ=255)

                                                                                     gcATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCtt   >  1:1368206/1‑91 (MQ=255)

                                                                                      cATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCTTc  >  1:4063255/1‑91 (MQ=255)

TAATGCAACAATCAGACGTCATTAGTGCTGCCAAAAAATATATGGAATCTATTCATCAAAATGATTATACAGGCCATGATATTGCGCATGTATATCGTGTCACTGCTTTAGCTAAATCAATCGCTGAAAATGAAGGTGTTAATGATACTTTAGTCATTGAACTCGCATGTTTGCTTC  >  USA300TCH1516_ALE/2210358‑2210534

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.