| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2211758 | 97 (0.990) | 6 (0.070) | 5/138 | NT | 6.2% | intergenic (+751/+62) | USA300HOU_RS11275/yidC | hypothetical protein/Membrane protein insertase YidC |
| ? | USA300TCH1516_ALE | = 2211795 | 97 (1.140) | intergenic (+788/+25) | USA300HOU_RS11275/yidC | hypothetical protein/Membrane protein insertase YidC | |||||
GGATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2211658‑2211758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaataatgtgcACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATACAATATG < USA300TCH1516_ALE/2211795‑2211706 GGATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAA > 1:2525956/1‑91GGATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAA > 1:1512089/1‑91 GATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAA > 1:2654553/1‑91 GATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAA > 1:1637807/1‑91 ATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACT‑AGTTTCGCTATTGAAGCGAAAAAT > 1:1243512/1‑91 TGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAAT > 1:1073435/1‑91 TGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAAT < 1:2824430/91‑1 GACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATA < 1:3480785/91‑1 ACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAA < 1:44889/91‑1 CTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAAT < 1:837770/91‑1 CTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAAT > 1:2872732/1‑91 TTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATG > 1:215314/1‑91 TTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATG > 1:215376/1‑91 TTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATG > 1:732403/1‑91 TTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATG > 1:731814/1‑91 CACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGC > 1:895116/1‑91 CACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGC > 1:504026/1‑91 CTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACT < 1:402499/91‑1 TATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATA < 1:1917634/91‑1 TATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATA < 1:1917649/91‑1 ATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAG < 1:2557464/91‑1 ATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGC < 1:1004896/91‑1 TTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACA < 1:1590340/91‑1 AATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATATGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTA < 1:496911/91‑1 AATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATATGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTA < 1:496910/91‑1 AATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTA > 1:2430240/1‑91 ATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTAT < 1:2885964/91‑1 ATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTAT > 1:768746/1‑91 ATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTAT > 1:3959187/1‑91 ATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTAT > 1:1264117/1‑91 ATAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTAT > 1:1332842/1‑91 TAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATA > 1:1876600/1‑91 TAATGTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATA > 1:1876337/1‑91 GTGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATACAAT > 1:81029/1‑91 TGCACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATACAATA < 1:2014250/91‑1 CACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATAATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATACAATATG < 1:3290610/91‑1 GGATGACTTTCACATTTGAAATCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2211658‑2211758‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaataatgtgcACCCTAAAAGTTGAAGATAATTTTAACTTTATAGGGCGCACATTATTTTTCGCTTCAATAGCGAAACTTAGTGTCACATTATACAATATG < USA300TCH1516_ALE/2211795‑2211706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |