BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2211758	97 (0.990)	6 (0.070)	5/138	NT	6.2%	intergenic (+751/+62)	USA300HOU_RS11275/yidC	hypothetical protein/Membrane protein insertase YidC
*	?	USA300TCH1516_ALE	= 2211795	97 (1.140)	6 (0.070)	5/138	NT	6.2%	intergenic (+788/+25)	USA300HOU_RS11275/yidC	hypothetical protein/Membrane protein insertase YidC

Only 100 of 131 total aligned reads displayed.

ACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGCCGCCGTTGT  >  USA300TCH1516_ALE/2211705‑2211884

acaTATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGt                                                                                           >  1:794781/1‑91 (MQ=255)

acaTATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGt                                                                                           >  1:3966395/1‑91 (MQ=255)

acaTATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGt                                                                                           <  1:124135/91‑1 (MQ=255)

acaTATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGt                                                                                           >  1:1459051/1‑91 (MQ=255)

   tatTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgca                                                                                        <  1:2014250‑M2/91‑4 (MQ=255)

    atTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcac                                                                                       >  1:81029‑M2/1‑87 (MQ=255)

        tataATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacatta                                                                                   >  1:1876600‑M2/1‑83 (MQ=255)

         ataATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattat                                                                                  <  1:2885964‑M2/91‑10 (MQ=255)

         ataATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattat                                                                                  >  1:1264117‑M2/1‑82 (MQ=255)

         ataATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattat                                                                                  >  1:3959187‑M2/1‑82 (MQ=255)

          taATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCATATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattatt                                                                                 <  1:496911‑M2/91‑11 (MQ=255)

          taATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCATATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattatt                                                                                 <  1:496910‑M2/91‑11 (MQ=255)

            aTGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTg                                                                               <  1:1588853/91‑1 (MQ=255)

             tgtgACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTgg                                                                              >  1:1771093/1‑91 (MQ=255)

                gACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACt                                                                           >  1:138916/1‑91 (MQ=255)

                 acacTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACtt                                                                          >  1:3835622/1‑91 (MQ=255)

                 acacTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACtt                                                                          >  1:3233205/1‑91 (MQ=255)

                  cacTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTg                                                                         <  1:1906473/91‑1 (MQ=255)

                   acTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGc                                                                        >  1:1784268/1‑91 (MQ=255)

                    cTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCt                                                                       <  1:2979824/91‑1 (MQ=255)

                      aaGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTaa                                                                     >  1:2527977/1‑91 (MQ=255)

                       aGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAg                                                                    >  1:801075/1‑91 (MQ=255)

                       aGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAg                                                                    <  1:2657447/91‑1 (MQ=255)

                        gTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAgg                                                                   >  1:2432090/1‑91 (MQ=255)

                        gTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAgg                                                                   <  1:2145368/91‑1 (MQ=255)

                         tttCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGt                                                                  <  1:129703/91‑1 (MQ=255)

                         tttCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGt                                                                  <  1:2051006/91‑1 (MQ=255)

                          ttCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGtt                                                                 <  1:492157/91‑1 (MQ=255)

                           tCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTa                                                                >  1:965809/1‑91 (MQ=255)

                            cGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAt                                                               >  1:1181286/1‑91 (MQ=255)

                             gCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtt                                                              <  1:1576272/91‑1 (MQ=255)

                              cTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAttt                                                             >  1:2923370/1‑91 (MQ=255)

                              cTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAttt                                                             >  1:2413792/1‑91 (MQ=255)

                               tATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttc                                                            <  1:267679/91‑1 (MQ=255)

                                aTTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttct                                                           <  1:2919831/91‑1 (MQ=255)

                                aTTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttct                                                           <  1:2153253/91‑1 (MQ=255)

                                aTTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttct                                                           <  1:2153323/91‑1 (MQ=255)

                                 ttGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttctt                                                          <  1:3003278/91‑1 (MQ=255)

                                 ttGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttctt                                                          <  1:1946584/91‑1 (MQ=255)

                                 ttGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttctt                                                          <  1:1946599/91‑1 (MQ=255)

                                  tGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttcttt                                                         <  1:2387962/91‑1 (MQ=255)

                                  tGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttcttt                                                         <  1:2991959/91‑1 (MQ=255)

                                  tGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttcttt                                                         <  1:3898663/91‑1 (MQ=255)

                                      gCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttctttttct                                                     >  1:3309250/1‑91 (MQ=255)

                                       cGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTAtttctttttctt                                                    >  1:3357968/1‑91 (MQ=255)

                                          aaaaTAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTctttttcttttt                                                 <  1:3121044/91‑1 (MQ=255)

                                           aaaTAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTa                                                >  1:3140431/1‑91 (MQ=255)

                                           aaaTAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTa                                                >  1:3140410/1‑91 (MQ=255)

                                            aataatGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAg                                               <  1:1986592/91‑1 (MQ=255)

                                            aataatGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAg                                               <  1:316939/91‑1 (MQ=255)

                                            aataatGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAg                                               <  1:310785/91‑1 (MQ=255)

                                              taatGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGac                                             <  1:1158530/91‑1 (MQ=255)

                                               aatGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGaca                                            >  1:836983/1‑91 (MQ=255)

                                                atGTGCGCCCTATAAAGTTAAAATTGTCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGacac                                           >  1:1840993/1‑91 (MQ=255)

                                                 tgtgCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattatttttcgcttcaatagcgaaacttagtgtcacattatacaa                                          <  1:1590340‑M2/91‑50 (MQ=255)

                                                 tgtgCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGAcaca                                          >  1:2381684/1‑91 (MQ=255)

                                                  gtgCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACaa                                         >  1:576548/1‑91 (MQ=255)

                                                  gtgCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACaa                                         >  1:1546683/1‑91 (MQ=255)

                                                  gtgCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACaa                                         >  1:1545942/1‑91 (MQ=255)

                                                    gcgcCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattatttttcgcttcaatagcgaaacttagtgtcacattatacaatat                                       <  1:1004896‑M2/91‑53 (MQ=255)

                                                      gcCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTtg                                     <  1:3217196/91‑1 (MQ=255)

                                                       cccTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTtgt                                    <  1:1874243/91‑1 (MQ=255)

                                                       cccTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTtgt                                    <  1:1874155/91‑1 (MQ=255)

                                                          tataAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattatttttcgcttcaatagcgaaacttagtgtcacattatacaatatgtgata                                 <  1:1917649‑M2/91‑59 (MQ=255)

                                                          tataAAGTTAAAATTATCTTCAACTTTTAGGGTgcacattatttttcgcttcaatagcgaaacttagtgtcacattatacaatatgtgata                                 <  1:1917634‑M2/91‑59 (MQ=255)

                                                             aaaGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGttt                              <  1:1286960/91‑1 (MQ=255)

                                                             aaaGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGttt                              >  1:949907/1‑91 (MQ=255)

                                                             aaaGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGttt                              >  1:949908/1‑91 (MQ=255)

                                                              aaGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGtttt                             <  1:1427490/91‑1 (MQ=255)

                                                               aGTTAAAATTATCTTCAACTTTTAGGGTgcacattatttttcgcttcaatagcgaaacttagtgtcacattatacaatatgtgataaatag                            <  1:402499‑M2/91‑64 (MQ=255)

                                                               aGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGttttt                            <  1:4109268/91‑1 (MQ=255)

                                                               aGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGttttt                            >  1:519241/1‑91 (MQ=255)

                                                                gTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTg                           >  1:2770160/1‑91 (MQ=255)

                                                                 ttAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGc                          <  1:1998239/91‑1 (MQ=255)

                                                                  tAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGcc                         <  1:1397287/91‑1 (MQ=255)

                                                                  tAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGcc                         <  1:1206592/91‑1 (MQ=255)

                                                                    aaaTTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCtt                       >  1:2665773/1‑91 (MQ=255)

                                                                    aaaTTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCtt                       >  1:405890/1‑91 (MQ=255)

                                                                    aaaTTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCtt                       >  1:406402/1‑91 (MQ=255)

                                                                     aaTTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCttt                      >  1:1013646/1‑91 (MQ=255)

                                                                     aaTTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCttt                      >  1:1705615/1‑91 (MQ=255)

                                                                            ttCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtg               <  1:3656690/91‑1 (MQ=255)

                                                                            ttCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtg               <  1:3656664/91‑1 (MQ=255)

                                                                              cAACTTTTAGGGTGCACATTATTTGGACTTTCTAAGGTTATTTCTTTTTCTTTTTAGACACTTTTTGTGTGTTTTTGCCTTTTTTATtgct             <  1:1235418/91‑1 (MQ=255)

                                                                              cAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtgct             <  1:837433/91‑1 (MQ=255)

                                                                              cAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtgct             <  1:243126/91‑1 (MQ=255)

                                                                              cAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtgct             <  1:4109358/91‑1 (MQ=255)

                                                                              cAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtgct             <  1:3684452/91‑1 (MQ=255)

                                                                               aaCTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATtgctg            <  1:2491473/91‑1 (MQ=255)

                                                                                 cTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTgcc          <  1:1642849/91‑1 (MQ=255)

                                                                                 cTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTgcc          <  1:3642433/91‑1 (MQ=255)

                                                                                 cTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTgcc          <  1:815780/91‑1 (MQ=255)

                                                                                     tAGGGTGCACATTATTTGGTCTTGCTCAGGTTATTTCTTTTTCTTTTTACACACAGCTTGTGTGTTTTTGCCTTTTTTATTGCTGccgccg      >  1:2697542/1‑91 (MQ=255)

                                                                                     tAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGccgccg      <  1:65298/91‑1 (MQ=255)

                                                                                     tAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGccgccg      <  1:65322/91‑1 (MQ=255)

                                                                                     tAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGccgccg      >  1:2697544/1‑91 (MQ=255)

                                                                                      aGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGCCGCCGt     <  1:706857/91‑1 (MQ=255)

                                                                                      aGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGCCGCCGt     >  1:585736/1‑91 (MQ=255)

                                                                                      aGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGCCGCCGt     >  1:585082/1‑91 (MQ=255)

                                                                                         gTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGCCGCCGTtgt  <  1:4104323/91‑1 (MQ=255)

ACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAAGTTAAAATTATCTTCAACTTTTAGGGTGCACATTATTTGGACTTGCTAAGGTTATTTCTTTTTCTTTTTAGACACAACTTGTGTGTTTTTGCCTTTTTTATTGCTGCCGCCGTTGT  >  USA300TCH1516_ALE/2211705‑2211884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.