| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2215750 = | 72 (0.730) | 5 (0.060) | 4/140 | NT | 7.0% | intergenic (‑42/+344) | tenA/sceD | Aminopyrimidine aminohydrolase/putative transglycosylase SceD |
| ? | USA300TCH1516_ALE | 2215808 = | 69 (0.800) | intergenic (‑100/+286) | tenA/sceD | Aminopyrimidine aminohydrolase/putative transglycosylase SceD | |||||
TGTTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2215849‑2215750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGT > USA300TCH1516_ALE/2215808‑2215894 TGTTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAGAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAA < 1:3293842/91‑1TGTTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAA < 1:93361/91‑1TGTTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAA < 1:3896336/91‑1 GTTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAA > 1:3486624/1‑91 TTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAAC < 1:1761577/91‑1 TTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAAC < 1:1761608/91‑1 TCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACT < 1:3745571/91‑1 AGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTAC > 1:394909/1‑91 AGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTAC < 1:3830049/91‑1 AGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTAC < 1:3829177/91‑1 CCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTT > 1:2090176/1‑91 CCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTT > 1:2090513/1‑91 AAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGG > 1:1890198/1‑91 TAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTG > 1:1184131/1‑91 TAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTG > 1:728726/1‑91 AGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGA > 1:3908435/1‑91 GAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTC < 1:1506363/91‑1 AACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTC < 1:3263440/91‑1 ACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCC > 1:283287/1‑91 ACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCC > 1:563460/1‑91 TACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTT > 1:3933640/1‑91 TACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTT < 1:4063165/91‑1 TACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTT > 1:1820465/1‑91 ACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTA < 1:2788999/91‑1 CTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAG < 1:1587461/91‑1 CTTTCCTACGTTGGTACTAACCAAATCAGCTGATAAGGGTCTGAGCAATTCATGTCATCCATATCATTAGGCTCCCCTAGTAGTTCCTTAG < 1:3318498/91‑1 TTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGT < 1:1346192/91‑1 TGTTCAGACCCTTATGACCTGATTTGGTTAGTACCAACGTAGGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2215849‑2215750‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGT > USA300TCH1516_ALE/2215808‑2215894 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |