| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2215750 = | 72 (0.730) | 5 (0.060) | 4/140 | NT | 7.0% | intergenic (‑42/+344) | tenA/sceD | Aminopyrimidine aminohydrolase/putative transglycosylase SceD |
| ? | USA300TCH1516_ALE | 2215808 = | 69 (0.800) | intergenic (‑100/+286) | tenA/sceD | Aminopyrimidine aminohydrolase/putative transglycosylase SceD | |||||
Only 100 of 125 total aligned reads displayed.
CATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGG > USA300TCH1516_ALE/2215660‑2215840 | cATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATG < 1:2444724‑M1/91‑1 (MQ=255) aTTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGA > 1:1104297‑M1/1‑91 (MQ=255) aTTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGA > 1:2004605‑M1/1‑91 (MQ=255) ttAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAA > 1:1044319‑M1/1‑91 (MQ=255) tAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAA < 1:2871968‑M1/91‑1 (MQ=255) tAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAA < 1:582395‑M1/91‑1 (MQ=255) actaaggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGaaa < 1:1346192‑M1/4‑1 (MQ=255) ctaaggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGAAag < 1:1587461‑M1/5‑1 (MQ=255) ctaaggaactactaggggagcctaatgatatggatgacatgaattgctcagacccttatcagctgatttggttagtaccaacgtagGAAag < 1:3318498‑M1/5‑1 (MQ=255) taaggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGAAagt < 1:2788999‑M1/6‑1 (MQ=255) tGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTA < 1:891538‑M1/91‑1 (MQ=255) aaggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGAAagta < 1:4063165‑M1/7‑1 (MQ=255) aaggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGAAagta > 1:3933640‑M1/85‑91 (MQ=255) aaggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGAAagta > 1:1820465‑M1/85‑91 (MQ=255) gATTGACTTTGCAGCTTGGTACAATCTTTGTGAAAATTCCATTGTAAAAAATCGTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAG < 1:3866096‑M1/91‑1 (MQ=255) ggaactactaggggagcctaatgatatggctgagatgaattgttcagacccttatgacctgatttggttagtaccaacgtagGAAagtagt > 1:563460‑M1/83‑91 (MQ=255) ggCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTg < 1:4123798/91‑1 (MQ=255) ggCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTg > 1:2443627/1‑91 (MQ=255) cTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGAt > 1:3844449/1‑91 (MQ=255) tttGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATg < 1:2326910/91‑1 (MQ=255) tttGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATg > 1:414335/1‑91 (MQ=255) ttGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATgg < 1:2788327/91‑1 (MQ=255) aGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAGTAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAAt < 1:3595261/91‑1 (MQ=255) gCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATg > 1:532374/1‑91 (MQ=255) gCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATg < 1:1980921/91‑1 (MQ=255) ttGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGtt > 1:857983/1‑91 (MQ=255) tGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTg < 1:94137/91‑1 (MQ=255) tGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTg > 1:2761022/1‑91 (MQ=255) tGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTCGATGGCAATGTTg > 1:4152539/1‑91 (MQ=255) ggTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGc < 1:1334490/91‑1 (MQ=255) gTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCt > 1:1104197/1‑91 (MQ=255) aCAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCtat < 1:1669144/91‑1 (MQ=255) aaTTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATAc < 1:3157639/91‑1 (MQ=255) aTTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACt < 1:657750/91‑1 (MQ=255) ttttGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAg < 1:3077145/91‑1 (MQ=255) tttGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCATCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGc < 1:3496941/91‑1 (MQ=255) ttGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAACAACTACTTCCAGCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGcc < 1:273683/91‑1 (MQ=255) ttGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGcc < 1:1980053/91‑1 (MQ=255) ttGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGcc < 1:2708211/91‑1 (MQ=255) tgtgAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGccc > 1:1370477/1‑91 (MQ=255) tgtgAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGccc > 1:4051947/1‑91 (MQ=255) tgtgAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGccc > 1:1581016/1‑91 (MQ=255) gAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCAt > 1:1049599/1‑91 (MQ=255) gAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCAt > 1:1886054/1‑91 (MQ=255) gAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCAt < 1:2206098/91‑1 (MQ=255) aaaaTTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATc < 1:179933/91‑1 (MQ=255) aaaTTCCATTGTAAAAAATCCTCCCTAAAGAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCa < 1:3330538/91‑1 (MQ=255) tCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTc < 1:1710388/91‑1 (MQ=255) ccATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCa > 1:1850419/1‑91 (MQ=255) cATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCaa > 1:2749854/1‑91 (MQ=255) cATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCaa > 1:2588392/1‑91 (MQ=255) ttGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATa < 1:3160540‑M2/91‑2 (MQ=255) ttGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATa < 1:3094346‑M2/91‑2 (MQ=255) ttGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATa < 1:2348133‑M2/91‑2 (MQ=255) gTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaac > 1:3378590‑M2/1‑88 (MQ=255) tcagacccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAact > 1:3908435‑M1/40‑91 (MQ=255) tAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaact < 1:1895553‑M1/91‑43 (MQ=255) tAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaact > 1:847076‑M2/1‑87 (MQ=255) tAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaact > 1:847035‑M2/1‑87 (MQ=255) cagacccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAacta > 1:728726‑M1/39‑91 (MQ=255) cagacccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAacta > 1:1184131‑M1/39‑91 (MQ=255) aaaaaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaacta < 1:563480‑M1/91‑44 (MQ=255) aaaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaactact < 1:2177659‑M1/91‑46 (MQ=255) aaaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactact > 1:768279‑M2/1‑84 (MQ=255) aaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactt < 1:942676‑M2/91‑9 (MQ=255) aaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactt > 1:116793‑M2/1‑83 (MQ=255) aaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaactacttt < 1:146718‑M1/91‑48 (MQ=255) aaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactacttt < 1:97109‑M2/91‑10 (MQ=255) aTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttc > 1:117652‑M2/1‑81 (MQ=255) aTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttc < 1:2470768‑M2/91‑11 (MQ=255) aTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttc < 1:3142661‑M2/91‑11 (MQ=255) tcctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTcc < 1:170969/91‑1 (MQ=255) cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCt > 1:2283641/1‑91 (MQ=255) cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCt > 1:2286424/1‑91 (MQ=255) ctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTa > 1:2870747/1‑91 (MQ=255) ccTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGt > 1:2804104/1‑91 (MQ=255) cTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGtt < 1:2722382/91‑1 (MQ=255) aaaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACt < 1:591433/91‑1 (MQ=255) aaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGttagt < 1:3820739/91‑5 (MQ=255) aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc > 1:1821687/1‑91 (MQ=255) aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATAATAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc > 1:3283991/1‑91 (MQ=255) aaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCa < 1:3701597/91‑1 (MQ=255) actactTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCaa > 1:3936797/1‑91 (MQ=255) actactTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCaa > 1:261387/1‑91 (MQ=255) actTCCAACATGAAACTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAAAAACTACTTTCCTACGTTGGTACTAACCAAATc > 1:3541032/1‑91 (MQ=255) ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg < 1:973808/91‑1 (MQ=255) ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg < 1:2709935/91‑1 (MQ=255) ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg < 1:153575/91‑1 (MQ=255) ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg > 1:3518741/1‑91 (MQ=255) ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt < 1:3992504/91‑1 (MQ=255) ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt < 1:3992303/91‑1 (MQ=255) ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt > 1:2191278/1‑91 (MQ=255) ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt > 1:2191480/1‑91 (MQ=255) aaCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCa < 1:677079/91‑1 (MQ=255) aTGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa < 1:1800297/91‑1 (MQ=255) aTGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa < 1:2788754/91‑1 (MQ=255) aTGAAAGTAGTTTGATGGCAATGTTACTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa < 1:3845452/91‑1 (MQ=255) gAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaactactttcatgttggaagtagtttttttatttagggaggat > 1:117652‑M1/1‑10 (MQ=255) gAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaactactttcatgttggaagtagtttttttatttagggaggat < 1:3142661‑M1/91‑82 (MQ=255) gAAAGTAGTTattgaagtgatggggctagtatagcaacattgccatcaaactactttcatgttggaagtagtttttttatttagggaggat < 1:2470768‑M1/91‑82 (MQ=255) | CATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGG > USA300TCH1516_ALE/2215660‑2215840 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |