BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2215750 =	72 (0.730)	5 (0.060)	4/140	NT	7.0%	intergenic (‑42/+344)	tenA/sceD	Aminopyrimidine aminohydrolase/putative transglycosylase SceD
*	?	USA300TCH1516_ALE	2215808 =	69 (0.800)	5 (0.060)	4/140	NT	7.0%	intergenic (‑100/+286)	tenA/sceD	Aminopyrimidine aminohydrolase/putative transglycosylase SceD

Only 100 of 107 total aligned reads displayed.

TCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGTATTC  >  USA300TCH1516_ALE/2215718‑2215898

tcctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTcc                                                                                            <  1:3418641/91‑1 (MQ=255)

tcctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTcc                                                                                            <  1:170969/91‑1 (MQ=255)

 cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTCGTTTGATGGCAATCTTGCTATACTAGCACCATCACTTCAATAACTACCTTCCt                                                                                           >  1:3859289/1‑91 (MQ=255)

 cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCt                                                                                           >  1:2286424/1‑91 (MQ=255)

 cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCt                                                                                           >  1:2283641/1‑91 (MQ=255)

  ctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTa                                                                                          >  1:2870747/1‑91 (MQ=255)

    cccTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACg                                                                                        >  1:1118177/1‑91 (MQ=255)

     ccTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGt                                                                                       >  1:2804104/1‑91 (MQ=255)

      cTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGtt                                                                                      <  1:2722382/91‑1 (MQ=255)

        aaataaaAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTgg                                                                                    <  1:1817709/91‑1 (MQ=255)

            aaaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACt                                                                                <  1:591433/91‑1 (MQ=255)

            aaaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACGTCAATAACTACTTTCCTACGTTGGTACt                                                                                >  1:2248203/1‑91 (MQ=255)

             aaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGttagt                                                                               <  1:3820739/91‑5 (MQ=255)

             aaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTa                                                                               <  1:532621/91‑1 (MQ=255)

               aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc                                                                             >  1:1821687/1‑91 (MQ=255)

               aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc                                                                             <  1:1244558/91‑1 (MQ=255)

               aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATAATAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc                                                                             >  1:3283991/1‑91 (MQ=255)

                  actactTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCaa                                                                          >  1:261387/1‑91 (MQ=255)

                  actactTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCaa                                                                          >  1:3936797/1‑91 (MQ=255)

                     actTCCAACATGAAACTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAAAAACTACTTTCCTACGTTGGTACTAACCAAATc                                                                       >  1:3541032/1‑91 (MQ=255)

                      ctTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTCGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCa                                                                      >  1:3596367/1‑91 (MQ=255)

                       ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                                     >  1:3518741/1‑91 (MQ=255)

                       ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                                     <  1:973808/91‑1 (MQ=255)

                       ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                                     <  1:153575/91‑1 (MQ=255)

                         ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                                   >  1:2191480/1‑91 (MQ=255)

                         ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                                   <  1:3992504/91‑1 (MQ=255)

                         ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                                   <  1:3992303/91‑1 (MQ=255)

                         ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                                   >  1:2191278/1‑91 (MQ=255)

                           aaCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCa                                                                 <  1:677079/91‑1 (MQ=255)

                           aaCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCa                                                                 <  1:3096647/91‑1 (MQ=255)

                              aTGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa                                                              <  1:2788754/91‑1 (MQ=255)

                              aTGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa                                                              <  1:1800297/91‑1 (MQ=255)

                              aTGAAAGTAGTTTGATGGCAATGTTACTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa                                                              <  1:3845452/91‑1 (MQ=255)

                                 aaagtagttattgaagtgatggggctagtatagcaacattgccatcaaactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAggg                                                           >  1:1890198‑M2/58‑91 (MQ=255)

                                 AAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAggg                                                           >  1:2090513‑M1/1‑91 (MQ=255)

                                 AAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAggg                                                           >  1:2090176‑M1/1‑91 (MQ=255)

                                    GTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCt                                                        <  1:3830049‑M1/91‑1 (MQ=255)

                                    GTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCt                                                        >  1:394909‑M1/1‑91 (MQ=255)

                                    GTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCt                                                        <  1:3829177‑M1/91‑1 (MQ=255)

                                     tagttattgaagtgatggggctagtatagcaacattgccatcaaactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTg                                                       >  1:1184131‑M2/54‑91 (MQ=255)

                                     tagttattgaagtgatggggctagtatagcaacattgccatcaaactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTg                                                       >  1:728726‑M2/54‑91 (MQ=255)

                                      agttattgaagtgatggggctagtatagcaacattgccatcaaactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGa                                                      >  1:3908435‑M2/53‑91 (MQ=255)

                                      AGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGa                                                      <  1:3745571‑M1/91‑1 (MQ=255)

                                       GTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGaa                                                     <  1:1761577‑M1/91‑1 (MQ=255)

                                       GTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGaa                                                     <  1:1761608‑M1/91‑1 (MQ=255)

                                        TTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAAc                                                    >  1:3486624‑M1/1‑91 (MQ=255)

                                         TTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACa                                                   <  1:93361‑M1/91‑1 (MQ=255)

                                         TTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACa                                                   <  1:3896336‑M1/91‑1 (MQ=255)

                                         TTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTCTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACa                                                   <  1:3293842‑M1/91‑1 (MQ=255)

                                             gaagtgatggggctagtatagcaacattgccatcaaactactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTc                                               <  1:1506363‑M2/46‑1 (MQ=255)

                                              ggCAATGTTGCTATACTAGCCCCCTCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                              >  1:175493/1‑91 (MQ=255)

                                              ggCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                              >  1:1047161/1‑91 (MQ=255)

                                              ggCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                              <  1:2128079/91‑1 (MQ=255)

                                              ggCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                              >  1:1044984/1‑91 (MQ=255)

                                               gCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAt                                             <  1:4080349/91‑1 (MQ=255)

                                                cAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtc                                            >  1:1264003/1‑91 (MQ=255)

                                                cAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtc                                            >  1:1263649/1‑91 (MQ=255)

                                                  aTGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtctc                                          >  1:3634979/1‑91 (MQ=255)

                                                  aTGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtctc                                          >  1:554782/1‑91 (MQ=255)

                                                   tGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCa                                         <  1:2444522/91‑1 (MQ=255)

                                                     ttGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGc                                       <  1:2171616/91‑1 (MQ=255)

                                                       gCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCa                                     >  1:1439405/1‑91 (MQ=255)

                                                        cTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCat                                    >  1:2354402/1‑91 (MQ=255)

                                                        cTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCat                                    <  1:2383439/91‑1 (MQ=255)

                                                         tataCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCata                                   >  1:918623/1‑91 (MQ=255)

                                                          ataCTAGCCCCATCACTTCAATAACTACTTTTCTACGTTGGTACGAACCAAATGAGGACATAAGGGTCTGAACAATTCATCTCAGCCatat                                  <  1:3312712/91‑1 (MQ=255)

                                                          ataCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCatat                                  >  1:2916875/1‑91 (MQ=255)

                                                          ataCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCatat                                  <  1:2684074/91‑1 (MQ=255)

                                                          ataCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCatat                                  >  1:1613459/1‑91 (MQ=255)

                                                           taCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATc                                 >  1:1806871/1‑91 (MQ=255)

                                                           taCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATc                                 >  1:3054461/1‑91 (MQ=255)

                                                             cTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCAt                               <  1:1807391/91‑1 (MQ=255)

                                                               aGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTa                             >  1:2910284/1‑91 (MQ=255)

                                                                 ccccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAgg                           >  1:644328/1‑91 (MQ=255)

                                                                 ccccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAgg                           <  1:1160429/91‑1 (MQ=255)

                                                                  cccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGc                          <  1:3993009/91‑1 (MQ=255)

                                                                   ccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCt                         >  1:3324904/1‑91 (MQ=255)

                                                                     aTCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcc                       <  1:3546702/91‑1 (MQ=255)

                                                                       cACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcccc                     <  1:2940644/91‑1 (MQ=255)

                                                                       cACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcccc                     <  1:2941150/91‑1 (MQ=255)

                                                                        aCTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCt                    <  1:542496/91‑1 (MQ=255)

                                                                          ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag                  >  1:3094911/1‑91 (MQ=255)

                                                                          ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag                  >  1:2398257/1‑91 (MQ=255)

                                                                          ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag                  <  1:1762926/91‑1 (MQ=255)

                                                                          ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATGAGGCTCCCCtag                  <  1:3206500/91‑1 (MQ=255)

                                                                          ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATGAGGCTCCCCtag                  <  1:3206517/91‑1 (MQ=255)

                                                                          ttCAATAACTACGTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag                  <  1:1957993/91‑1 (MQ=255)

                                                                           tCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtagt                 >  1:3320265/1‑91 (MQ=255)

                                                                             aaTAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtagtag               <  1:2445283/91‑1 (MQ=255)

                                                                             aaTAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtagtag               <  1:706690/91‑1 (MQ=255)

                                                                                 actactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTcc           >  1:563460‑M2/10‑91 (MQ=255)

                                                                                 actactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTcc           >  1:283287‑M2/10‑91 (MQ=255)

                                                                                   tactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCtt         >  1:1820465‑M2/8‑91 (MQ=255)

                                                                                   tactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCtt         >  1:3933640‑M2/8‑91 (MQ=255)

                                                                                   tactttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCtt         <  1:4063165‑M2/84‑1 (MQ=255)

                                                                                    actttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTa        <  1:2788999‑M2/85‑1 (MQ=255)

                                                                                     ctttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAg       <  1:1587461‑M2/86‑1 (MQ=255)

                                                                                     ctttcCTACGTTGGTACTAACCAAATCAGCTGATAAGGGTCTGAGCAATTCATGTCATCCATATCATTAGGCTCCCCTAGTAGTTCCTTAg       <  1:3318498‑M2/86‑1 (MQ=255)

                                                                                      tttcCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGt      <  1:1346192‑M2/87‑1 (MQ=255)

                                                                                          cTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGTATTc  >  1:3440089/1‑91 (MQ=255)

TCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAGTTCCTTAGTATTC  >  USA300TCH1516_ALE/2215718‑2215898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.