| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2215759 | 72 (0.730) | 4 (0.050) | 4/140 | NT | 5.7% | intergenic (‑51/+335) | tenA/sceD | Aminopyrimidine aminohydrolase/putative transglycosylase SceD |
| ? | USA300TCH1516_ALE | = 2215797 | 69 (0.800) | intergenic (‑89/+297) | tenA/sceD | Aminopyrimidine aminohydrolase/putative transglycosylase SceD | |||||
CATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2215660‑2215759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagtagttATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTACAA < USA300TCH1516_ALE/2215797‑2215708 CATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATG < 1:775133/91‑1CATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATG < 1:2444724/91‑1 ATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGA > 1:1104297/1‑91 ATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGA < 1:2404439/91‑1 ATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGA > 1:2004605/1‑91 TTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAA > 1:1044319/1‑91 TAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAA < 1:2871968/91‑1 TAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAA < 1:582395/91‑1 AATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAG > 1:4084029/1‑91 TGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTA < 1:891538/91‑1 GATTGACTTTGCAGCTTGGTACAATCTTTGTGAAAATTCCATTGTAAAAAATCGTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAG < 1:3866096/91‑1 TTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAGAGTAGTT > 1:2088252/1‑91 TAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACT < 1:1895553/91‑1 AAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTA < 1:563480/91‑1 AAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACT < 1:2177659/91‑1 AATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTT < 1:146718/91‑1 GAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGAT > 1:117652/1‑91 GAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGAT < 1:2470768/91‑1 GAAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGAT < 1:3142661/91‑1 AAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATT < 1:97109/91‑1 AAAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATT > 1:2518997/1‑91 AAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTT < 1:942676/91‑1 AAGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTT > 1:116793/1‑91 AGTAGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTT > 1:768279/1‑91 AGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTA > 1:847035/1‑91 AGTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTA > 1:847076/1‑91 GTTATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTAC > 1:3378590/1‑91 TATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTACAA < 1:3160540/91‑1 TATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTACAA < 1:3094346/91‑1 TATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTACAA < 1:2348133/91‑1 CATTAATGATTGGCTTTGCAGCTTGGTACAATTTTTGTGAAAATTCCATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2215660‑2215759‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaagtagttATTGAAGTGATGGGGCTAGTATAGCAACATTGCCATCAAACTACTTTCATGTTGGAAGTAGTTTTTTTATTTAGGGAGGATTTTTTACAA < USA300TCH1516_ALE/2215797‑2215708 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |