BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2215759	72 (0.730)	4 (0.050)	4/140	NT	5.7%	intergenic (‑51/+335)	tenA/sceD	Aminopyrimidine aminohydrolase/putative transglycosylase SceD
*	?	USA300TCH1516_ALE	= 2215797	69 (0.800)	4 (0.050)	4/140	NT	5.7%	intergenic (‑89/+297)	tenA/sceD	Aminopyrimidine aminohydrolase/putative transglycosylase SceD

Only 100 of 114 total aligned reads displayed.

ATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAG  >  USA300TCH1516_ALE/2215707‑2215885

aTTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAAt                                                                                          <  1:2787872/91‑1 (MQ=255)

 ttGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATa                                                                                         <  1:2348133‑M2/91‑2 (MQ=255)

 ttGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATa                                                                                         <  1:3094346‑M2/91‑2 (MQ=255)

 ttGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATa                                                                                         <  1:3160540‑M2/91‑2 (MQ=255)

   gTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaac                                                                                       >  1:3378590‑M2/1‑88 (MQ=255)

    tcagacccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAact                                                                                      >  1:3908435‑M1/40‑91 (MQ=255)

    tAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaact                                                                                      >  1:847076‑M2/1‑87 (MQ=255)

    tAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaact                                                                                      >  1:847035‑M2/1‑87 (MQ=255)

     cagacccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAacta                                                                                     >  1:1184131‑M1/39‑91 (MQ=255)

     cagacccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAacta                                                                                     >  1:728726‑M1/39‑91 (MQ=255)

        aaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactt                                                                                  <  1:942676‑M2/91‑9 (MQ=255)

        aaaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactt                                                                                  >  1:116793‑M2/1‑83 (MQ=255)

         cccttatgacctgatttggttagtaccaacgtagGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACttt                                                                                 >  1:1890198‑M1/35‑91 (MQ=255)

         aaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactacttt                                                                                 <  1:97109‑M2/91‑10 (MQ=255)

         aaTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactacttt                                                                                 >  1:2518997‑M2/1‑82 (MQ=255)

          aTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttc                                                                                <  1:3142661‑M2/91‑11 (MQ=255)

          aTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttc                                                                                >  1:117652‑M2/1‑81 (MQ=255)

          aTCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttc                                                                                <  1:2470768‑M2/91‑11 (MQ=255)

           tcctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTcc                                                                               <  1:170969/91‑1 (MQ=255)

            cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTCGTTTGATGGCAATCTTGCTATACTAGCACCATCACTTCAATAACTACCTTCCt                                                                              >  1:3859289/1‑91 (MQ=255)

            cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCt                                                                              >  1:2286424/1‑91 (MQ=255)

            cctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCt                                                                              >  1:2283641/1‑91 (MQ=255)

             ctccCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTa                                                                             >  1:2870747/1‑91 (MQ=255)

               cccTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACg                                                                           >  1:1118177/1‑91 (MQ=255)

                ccTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGt                                                                          >  1:2804104/1‑91 (MQ=255)

                 cTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGtt                                                                         <  1:2722382/91‑1 (MQ=255)

                   aaataaaAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTgg                                                                       <  1:1817709/91‑1 (MQ=255)

                       aaaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACt                                                                   <  1:591433/91‑1 (MQ=255)

                       aaaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACGTCAATAACTACTTTCCTACGTTGGTACt                                                                   >  1:2248203/1‑91 (MQ=255)

                        aaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGttagt                                                                  <  1:3820739/91‑5 (MQ=255)

                        aaaaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTa                                                                  <  1:532621/91‑1 (MQ=255)

                          aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc                                                                <  1:1244558/91‑1 (MQ=255)

                          aaaaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATAATAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAAc                                                                >  1:3283991/1‑91 (MQ=255)

                            aaCTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCa                                                              <  1:3701597/91‑1 (MQ=255)

                             actactTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCaa                                                             >  1:261387/1‑91 (MQ=255)

                                actTCCAACATGAAACTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAAAAACTACTTTCCTACGTTGGTACTAACCAAATc                                                          >  1:3541032/1‑91 (MQ=255)

                                 ctTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTCGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCa                                                         >  1:3596367/1‑91 (MQ=255)

                                  ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                        <  1:2709935/91‑1 (MQ=255)

                                  ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                        >  1:3518741/1‑91 (MQ=255)

                                  ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                        <  1:153575/91‑1 (MQ=255)

                                  ttCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAg                                                        <  1:973808/91‑1 (MQ=255)

                                    ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                      <  1:3992303/91‑1 (MQ=255)

                                    ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                      >  1:2191278/1‑91 (MQ=255)

                                    ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                      >  1:2191480/1‑91 (MQ=255)

                                    ccAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGt                                                      <  1:3992504/91‑1 (MQ=255)

                                      aaCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCa                                                    <  1:3096647/91‑1 (MQ=255)

                                      aaCATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCa                                                    <  1:677079/91‑1 (MQ=255)

                                         aTGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa                                                 <  1:2788754/91‑1 (MQ=255)

                                         aTGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa                                                 <  1:1800297/91‑1 (MQ=255)

                                         aTGAAAGTAGTTTGATGGCAATGTTACTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATaa                                                 <  1:3845452/91‑1 (MQ=255)

                                            aaaGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttcatgttggaagtagtttttttatttagggaggatt                                              <  1:146718‑M2/91‑45 (MQ=255)

                                            AAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAggg                                              >  1:2090513‑M1/1‑91 (MQ=255)

                                            AAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAggg                                              >  1:2090176‑M1/1‑91 (MQ=255)

                                              agtagtTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttcatgttggaagtagtttttttatttagggaggatttt                                            <  1:2177659‑M2/91‑47 (MQ=255)

                                               GTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCt                                           <  1:3830049‑M1/91‑1 (MQ=255)

                                               GTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCt                                           >  1:394909‑M1/1‑91 (MQ=255)

                                               GTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCt                                           <  1:3829177‑M1/91‑1 (MQ=255)

                                                tagtTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttcatgttggaagtagtttttttatttagggaggatttttt                                          <  1:563480‑M2/91‑49 (MQ=255)

                                                 agtTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATaactactttcatgttggaagtagtttttttatttagggaggatttttta                                         <  1:1895553‑M2/91‑50 (MQ=255)

                                                  GTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGaa                                        <  1:1761577‑M1/91‑1 (MQ=255)

                                                  GTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGaa                                        <  1:1761608‑M1/91‑1 (MQ=255)

                                                   TTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAAc                                       >  1:3486624‑M1/1‑91 (MQ=255)

                                                    TTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACa                                      <  1:3896336‑M1/91‑1 (MQ=255)

                                                    TTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACa                                      <  1:93361‑M1/91‑1 (MQ=255)

                                                    TTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTCTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACa                                      <  1:3293842‑M1/91‑1 (MQ=255)

                                                     tGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACaa                                     <  1:211678/91‑1 (MQ=255)

                                                         ggCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                 >  1:1047161/1‑91 (MQ=255)

                                                         ggCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                 >  1:1044984/1‑91 (MQ=255)

                                                         ggCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCa                                 <  1:2128079/91‑1 (MQ=255)

                                                          gCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAt                                <  1:4080349/91‑1 (MQ=255)

                                                           cAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtc                               >  1:1264003/1‑91 (MQ=255)

                                                             aTGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtctc                             >  1:554782/1‑91 (MQ=255)

                                                             aTGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCAtctc                             >  1:3634979/1‑91 (MQ=255)

                                                              tGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCa                            <  1:2444522/91‑1 (MQ=255)

                                                                  gCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCa                        >  1:1439405/1‑91 (MQ=255)

                                                                   cTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCat                       <  1:2383439/91‑1 (MQ=255)

                                                                    tataCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCata                      >  1:918623/1‑91 (MQ=255)

                                                                     ataCTAGCCCCATCACTTCAATAACTACTTTTCTACGTTGGTACGAACCAAATGAGGACATAAGGGTCTGAACAATTCATCTCAGCCatat                     <  1:3312712/91‑1 (MQ=255)

                                                                     ataCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCatat                     >  1:1613459/1‑91 (MQ=255)

                                                                      taCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATc                    >  1:3054461/1‑91 (MQ=255)

                                                                      taCTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATc                    >  1:1806871/1‑91 (MQ=255)

                                                                        cTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCAt                  <  1:1807391/91‑1 (MQ=255)

                                                                          aGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTa                >  1:2910284/1‑91 (MQ=255)

                                                                            ccccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAgg              >  1:644328/1‑91 (MQ=255)

                                                                            ccccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAgg              <  1:1160429/91‑1 (MQ=255)

                                                                             cccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGc             <  1:3993009/91‑1 (MQ=255)

                                                                              ccATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCt            >  1:3324904/1‑91 (MQ=255)

                                                                                aTCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcc          <  1:4015523/91‑1 (MQ=255)

                                                                                aTCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcc          <  1:3546702/91‑1 (MQ=255)

                                                                                  cACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcccc        <  1:1743515/91‑1 (MQ=255)

                                                                                  cACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcccc        <  1:2940644/91‑1 (MQ=255)

                                                                                  cACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTcccc        <  1:2941150/91‑1 (MQ=255)

                                                                                     ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag     >  1:2398257/1‑91 (MQ=255)

                                                                                     ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag     <  1:1762926/91‑1 (MQ=255)

                                                                                     ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag     >  1:3094911/1‑91 (MQ=255)

                                                                                     ttCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATGAGGCTCCCCtag     <  1:3206517/91‑1 (MQ=255)

                                                                                     ttCAATAACTACGTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtag     <  1:1957993/91‑1 (MQ=255)

                                                                                      tCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtagt    >  1:3320265/1‑91 (MQ=255)

                                                                                        aaTAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtagtag  <  1:2445283/91‑1 (MQ=255)

                                                                                        aaTAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCtagtag  <  1:706690/91‑1 (MQ=255)

ATTGTAAAAAATCCTCCCTAAATAAAAAAACTACTTCCAACATGAAAGTAGTTTGATGGCAATGTTGCTATACTAGCCCCATCACTTCAATAACTACTTTCCTACGTTGGTACTAACCAAATCAGGTCATAAGGGTCTGAACAATTCATCTCAGCCATATCATTAGGCTCCCCTAGTAG  >  USA300TCH1516_ALE/2215707‑2215885

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.