| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2218211 = | 63 (0.640) | 9 (0.120) | 7/124 | NT | 13.5% | intergenic (+4/+55) | USA300HOU_RS11330/fabZ | hypothetical protein/3‑hydroxyacyl‑[acyl‑carrier‑protein] dehydratase FabZ |
| ? | USA300TCH1516_ALE | 2218261 = | 67 (0.880) | intergenic (+54/+5) | USA300HOU_RS11330/fabZ | hypothetical protein/3‑hydroxyacyl‑[acyl‑carrier‑protein] dehydratase FabZ | |||||
GTCAACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2218318‑2218211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatctttgaatgttttttTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTACCT > USA300TCH1516_ALE/2218261‑2218350 GTCGACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATA < 1:3216667/91‑1 TCAACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAACAAAAAAAAACATTCAAAGATTTAATGTGTTGGCATA < 1:561424/91‑1 TCAACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAACAAAAAAAAACATTCAAAGATTTAATGTGTTGGCATA < 1:561615/91‑1 TCAACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑‑AAAAAAACATTCAAAGATTTAATGTGTTGGCATAAT > 1:2774453/1‑91 AACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATC > 1:3963111/1‑91 AACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATC > 1:3965371/1‑91 AACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATC > 1:1611896/1‑91 AACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATC > 1:1611906/1‑91 CTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTT < 1:13734/91‑1 CTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTT < 1:1570775/91‑1 TTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAATAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTT < 1:3497599/91‑1 TTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTT > 1:2055395/1‑91 TGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTG > 1:330543/1‑91 CTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAA < 1:2333064/91‑1 CTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAA < 1:2333751/91‑1 TAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTT > 1:608279/1‑91 AGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTT > 1:3161743/1‑91 GTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTT > 1:3711114/1‑91 taaTGAACTTACATATGCAATTCAAGATGAAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTT < 1:2711867/88‑1 AAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACT > 1:664383/1‑91 AACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTA > 1:3878666/1‑91 AACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTA > 1:1181478/1‑91 CATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCCTGAATTGCAAATGTAAGTTCACAACTACA > 1:972954/1‑91 TTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAG > 1:606301/1‑91 AAAGATTTAATGTGTTGGCATAATCTTTGAATGTT‑‑‑‑‑‑‑TTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACC > 1:1890866/1‑91 TTAATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGAC > 1:3921068/1‑91 ATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCAT > 1:2893846/1‑91 ATGTGTTGGCATAATCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCAT > 1:1592793/1‑91 TCTTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTA > 1:303965/1‑91 TTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGC < 1:1103416/91‑1 TTTGAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGC < 1:1005126/91‑1 GAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATT < 1:3516376/91‑1 GAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATT < 1:2838710/91‑1 GAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATT > 1:1558737/1‑91 GAATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATT < 1:1821944/91‑1 AATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTA > 1:3612360/1‑91 AATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTA < 1:881607/91‑1 AATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTA < 1:881445/91‑1 AATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTA > 1:1294850/1‑91 ATGTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTAC > 1:2260691/1‑91 TTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTT < 1:1541546/91‑1 TTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTA < 1:1823128/91‑1 TTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTA < 1:3764159/91‑1 TTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTAC < 1:2630350/91‑1 TTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTACC < 1:4067105/91‑1 TTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTACCT < 1:2577203/91‑1 TTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTACCT < 1:2577243/91‑1 GTCAACTTGCTTGTAGTTGTGAACTTACATTTGCAATTCAAGATGTAAAATAAAAC‑AAAAAAAACATTCAAAGATTTAATGTGTTGGCATAATCTTTGAATGTTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2218318‑2218211‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatctttgaatgttttttTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCTTTAGCATTACCTTTACCT > USA300TCH1516_ALE/2218261‑2218350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |