| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2245371 | 96 (0.980) | 10 (0.110) | 8/144 | NT | 10.2% | intergenic (‑230/+106) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta |
| ? | USA300TCH1516_ALE | = 2245389 | 89 (1.010) | intergenic (‑248/+88) | pyrG/rpoE | CTP synthase/putative DNA‑directed RNA polymerase subunit delta | |||||
CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2245274‑2245371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgctccc‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < USA300TCH1516_ALE/2245389‑2245300 CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAA > 1:2142113/1‑91 CGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAAC < 1:860383/91‑1 CGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAAC > 1:1887501/1‑91 GTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACG < 1:426870/91‑1 TTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGC < 1:1036427/91‑1 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 1:1094393/1‑91 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT > 1:3388352/1‑91 TTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCT < 1:1837145/91‑1 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 1:1240699/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 1:1326781/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 1:4015627/1‑91 CCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCC > 1:2406816/1‑91 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC > 1:2926866/1‑91 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC > 1:2239062/1‑91 CATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC < 1:1603613/91‑1 GTATATCATTTACAACTTTGATCTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAG < 1:3874618/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGG < 1:2153962/91‑1 ATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGG < 1:898974/91‑1 ATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGGAG < 1:3100069/91‑1 ATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGGAG < 1:3101126/91‑1 ATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGT < 1:1406329/91‑1 CTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTAT < 1:1219640/91‑1 ATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAA < 1:807647/91‑1 ATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAG‑GGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAAT > 1:1183217/1‑91 TTAAAGAAAAAAGCGCTCCC‑CTTGGAGAATTTGTGAGAGGGAGAGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATC < 1:1712578/91‑1 ACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT < 1:2517490/91‑1 ACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 1:1701957/1‑91 ACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAAT > 1:877608/1‑91 ACGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCG‑TTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:1358174/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:502702/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:389893/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:985256/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:387357/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:387356/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:1358439/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:2825325/1‑91 CGCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATG > 1:2825275/1‑91 GCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA > 1:4063524/1‑91 GCTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGA < 1:511010/91‑1 CTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGAT > 1:3162719/1‑91 CTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGAT < 1:957194/91‑1 CTCCC‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGAT > 1:2609655/1‑91 TCCC‑CTTACAGCATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATA < 1:3760443/91‑1 CC‑CGTACAGGATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATA < 1:3729593/91‑1 C‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC > 1:960981/1‑91 CCGTTTCCATACTGCTATGTCACTATGTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2245274‑2245371‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgctccc‑CTTACAGAATTTGTGAGAGGGAGCGTTTTTTTATTTAATTGAGTAAATCAAGAAATGATAACGCAAAAATCAAAGTTGTAAATGATATAC < USA300TCH1516_ALE/2245389‑2245300 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |