BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2245371	96 (0.980)	10 (0.110)	8/144	NT	10.2%	intergenic (‑230/+106)	pyrG/rpoE	CTP synthase/putative DNA‑directed RNA polymerase subunit delta
*	?	USA300TCH1516_ALE	= 2245389	89 (1.010)	10 (0.110)	8/144	NT	10.2%	intergenic (‑248/+88)	pyrG/rpoE	CTP synthase/putative DNA‑directed RNA polymerase subunit delta

Only 100 of 145 total aligned reads displayed.

GTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTA  >  USA300TCH1516_ALE/2245300‑2245479

gTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGg                                                                                           >  1:960981‑M2/1‑90 (MQ=255)

   tatCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATGCTGTAAGggga                                                                                        <  1:3760443‑M2/91‑5 (MQ=255)

    atCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggag                                                                                       >  1:2609655‑M2/1‑86 (MQ=255)

    atCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggag                                                                                       >  1:3162719‑M2/1‑86 (MQ=255)

     tCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagc                                                                                      <  1:511010‑M2/91‑7 (MQ=255)

      cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg                                                                                     >  1:985256‑M2/1‑84 (MQ=255)

      cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg                                                                                     >  1:2825275‑M2/1‑84 (MQ=255)

      cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg                                                                                     >  1:387357‑M2/1‑84 (MQ=255)

      cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcg                                                                                     >  1:389893‑M2/1‑84 (MQ=255)

      cATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAA‑CGCTCCCTCTCACAAATTCTGTAAGgggagcgt                                                                                    >  1:1358174‑M2/1‑83 (MQ=255)

       aTTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcgt                                                                                    >  1:877608‑M2/1‑83 (MQ=255)

       aTTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcgt                                                                                    >  1:1701957‑M2/1‑83 (MQ=255)

       aTTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGgggagcgt                                                                                    <  1:2517490‑M2/91‑9 (MQ=255)

        tttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGta                                                                                   <  1:2123403/91‑1 (MQ=255)

        tttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGta                                                                                   <  1:2123280/91‑1 (MQ=255)

         ttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtat                                                                                  >  1:4032976/1‑91 (MQ=255)

         ttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtat                                                                                  <  1:2704374/91‑1 (MQ=255)

         ttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtat                                                                                  >  1:3602151/1‑91 (MQ=255)

         ttACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtat                                                                                  >  1:1853964/1‑91 (MQ=255)

          tACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGtata                                                                                 <  1:2937949/91‑1 (MQ=255)

            cAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATaaa                                                                               >  1:902401/1‑91 (MQ=255)

            cAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATaaa                                                                               >  1:1555151/1‑91 (MQ=255)

             aaCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAt                                                                              >  1:136268/1‑91 (MQ=255)

             aaCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAt                                                                              <  1:783513/91‑1 (MQ=255)

             aaCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAt                                                                              <  1:840923/91‑1 (MQ=255)

              aCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATaaaat                                                                             <  1:3558811/91‑3 (MQ=255)

              aCTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATaaaat                                                                             <  1:692129/91‑3 (MQ=255)

               cTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAAttt                                                                            <  1:233096/91‑1 (MQ=255)

                    aTTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCC‑CTTACAGAATTTGTGAGagggagcgtttttttatttaat                                                                      >  1:1183217‑M2/1‑69 (MQ=255)

                     tttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGCGCGTATAAATTTTATaca                                                                      >  1:1714823/1‑91 (MQ=255)

                      ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATacac                                                                     >  1:1386130/1‑91 (MQ=255)

                      ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATacac                                                                     <  1:1296113/91‑1 (MQ=255)

                      ttttGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTATGTAAGGGGAGCGTATAAATTTTATacac                                                                     >  1:1637894/1‑91 (MQ=255)

                         tGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtg                                                                  >  1:2572953/1‑91 (MQ=255)

                          gCGTTGTCATTTCTTGATTTACTCATTTAAATAAAAAAAGGCTCCCTCTCACAGATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt                                                                 <  1:3856746/91‑1 (MQ=255)

                          gCGTTGTCATTTCTTGATTTACTCACTTAAATAAAAAAAGGCTCCCTCTCACATATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt                                                                 <  1:3856917/91‑1 (MQ=255)

                          gCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt                                                                 <  1:3636806/91‑1 (MQ=255)

                          gCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACgtgt                                                                 <  1:2188422/91‑1 (MQ=255)

                               aTCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTAt                                                            <  1:778829/91‑1 (MQ=255)

                                        tGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAg                                                   >  1:1677850/1‑91 (MQ=255)

                                         gATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGc                                                  <  1:23762/91‑1 (MQ=255)

                                          aTTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGcc                                                 <  1:3995537/91‑1 (MQ=255)

                                          aTTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGcc                                                 <  1:1438187/91‑1 (MQ=255)

                                           tttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGccc                                                <  1:1794235/91‑1 (MQ=255)

                                           tttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGccc                                                <  1:3469750/91‑1 (MQ=255)

                                           tttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGccc                                                >  1:3000460/1‑91 (MQ=255)

                                            ttACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCg                                               <  1:407696/91‑1 (MQ=255)

                                              aCTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGaa                                             <  1:3909848/91‑1 (MQ=255)

                                              aCTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGaa                                             <  1:2993824/91‑1 (MQ=255)

                                              aCTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGaa                                             <  1:1108092/91‑1 (MQ=255)

                                                   aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                        >  1:405671/1‑91 (MQ=255)

                                                   aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                        >  1:3082274/1‑91 (MQ=255)

                                                   aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                        >  1:405631/1‑91 (MQ=255)

                                                   aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                        <  1:3773440/91‑1 (MQ=255)

                                                   aTTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATGTTATACACGTGTCCTATTTAAAGGAGCCCGAATaaaa                                        <  1:3490714/91‑1 (MQ=255)

                                                        ataaaAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTa                                   >  1:769283/1‑91 (MQ=255)

                                                            aaaaaCGCTCCGTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcat                               <  1:3758710/91‑1 (MQ=255)

                                                            aaaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcat                               <  1:3999882/91‑1 (MQ=255)

                                                             aaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcatc                              >  1:58746/1‑91 (MQ=255)

                                                             aaaaCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTatcatc                              >  1:58747/1‑91 (MQ=255)

                                                                aCGCTCCCTCTCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaaaatcaaagttgtaaat                           <  1:1406329‑M2/91‑66 (MQ=255)

                                                                aCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                           >  1:2012233/1‑91 (MQ=255)

                                                                aCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                           <  1:3957098/91‑1 (MQ=255)

                                                                aCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                           >  1:1782796/1‑91 (MQ=255)

                                                                aCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                           <  1:3670741/91‑1 (MQ=255)

                                                                aCGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCttt                           <  1:489345/91‑1 (MQ=255)

                                                                 cGCTCCCTCTCACAAATTCTGTAAGGGGGGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc                          >  1:4084179/1‑91 (MQ=255)

                                                                 cGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc                          >  1:2317497/1‑91 (MQ=255)

                                                                 cGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTc                          >  1:490445/1‑91 (MQ=255)

                                                                  gCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCa                         <  1:1722813/91‑1 (MQ=255)

                                                                  gCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCa                         <  1:1948221/91‑1 (MQ=255)

                                                                  gCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCa                         <  1:3953802/91‑1 (MQ=255)

                                                                   cTCCCTCTCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaaaatcaaagttgtaaatgat                        <  1:3101126‑M2/91‑69 (MQ=255)

                                                                   cTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCaa                        <  1:104490/91‑1 (MQ=255)

                                                                   cTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCaa                        >  1:3991714/1‑91 (MQ=255)

                                                                    tCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAAc                       >  1:1465207/1‑91 (MQ=255)

                                                                     cccTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACt                      >  1:956076/1‑91 (MQ=255)

                                                                      ccTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTa                     <  1:2608757/91‑1 (MQ=255)

                                                                      ccTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTa                     <  1:2606891/91‑1 (MQ=255)

                                                                       ctctCACAAATTCTGTAAGgggagcgtttttttatttaattgagtaaatcaagaaatgataacgcaaagatcaaagttgtaaatgatatac                    <  1:3874618‑M2/91‑73 (MQ=255)

                                                                           cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                >  1:3943906/1‑91 (MQ=255)

                                                                           cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                <  1:1035082/91‑1 (MQ=255)

                                                                           cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                >  1:875409/1‑91 (MQ=255)

                                                                           cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                >  1:2125383/1‑91 (MQ=255)

                                                                           cacaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGt                <  1:526840/91‑1 (MQ=255)

                                                                            acaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTc               <  1:188744/91‑1 (MQ=255)

                                                                            acaAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTc               >  1:496300/1‑91 (MQ=255)

                                                                             caAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTca              >  1:1782746/1‑91 (MQ=255)

                                                                              aaaTTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaa             >  1:3026118/1‑91 (MQ=255)

                                                                                 ttCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaaca          <  1:830696/91‑1 (MQ=255)

                                                                                   cTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaacaaa        >  1:2095995/1‑91 (MQ=255)

                                                                                   cTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTcaaacaaa        >  1:2095833/1‑91 (MQ=255)

                                                                                     gTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaa      >  1:3081206/1‑91 (MQ=255)

                                                                                      tAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaaa     <  1:2871829/91‑1 (MQ=255)

                                                                                      tAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACaaaaaa     <  1:1181665/91‑1 (MQ=255)

                                                                                       aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt    <  1:2236795/91‑1 (MQ=255)

                                                                                       aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt    <  1:2290226/91‑1 (MQ=255)

                                                                                       aaGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAAt    >  1:801884/1‑91 (MQ=255)

                                                                                         ggggAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTa  <  1:1697673/91‑1 (MQ=255)

                                                                                         ggggAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTa  <  1:169165/91‑1 (MQ=255)

GTATATCATTTACAACTTTGATTTTTGCGTTATCATTTCTTGATTTACTCAATTAAATAAAAAAACGCTCCCTCTCACAAATTCTGTAAGGGGAGCGTATAAATTTTATACACGTGTCCTATTTAAAGGAGCCCGAATAAAATTTTATCATCTTTCAACTAAAAGTCAAACAAAAAATTA  >  USA300TCH1516_ALE/2245300‑2245479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.