| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2252658 = | 74 (0.750) | 5 (0.050) | 4/148 | NT | 6.3% | intergenic (+94/+58) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein |
| ? | USA300TCH1516_ALE | 2252704 = | 80 (0.880) | intergenic (+140/+12) | luxS/USA300HOU_RS11525 | S‑ribosylhomocysteine lyase/hypothetical protein | |||||
TGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2252753‑2252658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTT > USA300TCH1516_ALE/2252704‑2252793 TGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTC > 1:341113/1‑91 GCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCG > 1:1992726/1‑91 CAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGA > 1:3464162/1‑91 GTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATT < 1:1274129/91‑1 AATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAAC > 1:1779603/1‑91 AATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATCTGAGAACCACTATAATTTCTTAATTAGTCGCATTAACACGAAC > 1:4147761/1‑91 TCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTG > 1:1522430/1‑91 CGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGC > 1:1931022/1‑91 ACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATA > 1:1974237/1‑91 CGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAAT < 1:2809894/91‑1 CGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAAT > 1:3741257/1‑91 CGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAAT > 1:912228/1‑91 GATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATT < 1:3660665/91‑1 ATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTG < 1:2580096/91‑1 ATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTG < 1:3248338/91‑1 TATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTT > 1:1144961/1‑91 TGCAGTTCGTGTTAATGGGACTAATTAAGAAATTATAGTGGTTCTCAAATAAATCGGACAAATGTTAAAGATTTTACTTTTTCATTTGTTCGATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2252753‑2252658‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTT > USA300TCH1516_ALE/2252704‑2252793 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |