BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2252658 =	74 (0.750)	5 (0.050)	4/148	NT	6.3%	intergenic (+94/+58)	luxS/USA300HOU_RS11525	S‑ribosylhomocysteine lyase/hypothetical protein
*	?	USA300TCH1516_ALE	2252704 =	80 (0.880)	5 (0.050)	4/148	NT	6.3%	intergenic (+140/+12)	luxS/USA300HOU_RS11525	S‑ribosylhomocysteine lyase/hypothetical protein

Only 100 of 129 total aligned reads displayed.

ATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTA  >  USA300TCH1516_ALE/2252615‑2252794

aTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttat                                                                                           >  1:2546698/1‑91 (MQ=255)

aTCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttat                                                                                           >  1:2546588/1‑91 (MQ=255)

 tCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttatt                                                                                          >  1:2025066/1‑91 (MQ=255)

  cGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttattt                                                                                         <  1:1203557/91‑1 (MQ=255)

  cGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGatttattt                                                                                         >  1:2284101/1‑91 (MQ=255)

   gCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTg                                                                                        >  1:596911/1‑91 (MQ=255)

   gCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTg                                                                                        <  1:703198/91‑1 (MQ=255)

     cATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTgag                                                                                      >  1:4114339/1‑91 (MQ=255)

     cATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTgag                                                                                      <  1:335007/91‑1 (MQ=255)

          tCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCa                                                                                 <  1:1686811/91‑1 (MQ=255)

           ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                                <  1:1242040/91‑1 (MQ=255)

           ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                                <  1:2861039/91‑1 (MQ=255)

           ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                                <  1:2861393/91‑1 (MQ=255)

           ccAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCAc                                                                                <  1:3026802/91‑1 (MQ=255)

            cAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACt                                                                               <  1:274552/91‑1 (MQ=255)

            cAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACt                                                                               <  1:1007077/91‑1 (MQ=255)

            cAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACt                                                                               <  1:2109191/91‑1 (MQ=255)

             aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                              <  1:2640498/91‑1 (MQ=255)

             aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                              >  1:1759437/1‑91 (MQ=255)

             aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                              >  1:3839448/1‑91 (MQ=255)

             aaCTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACta                                                                              <  1:3485576/91‑1 (MQ=255)

              actgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACtat                                                                             <  1:1745637‑M2/82‑1 (MQ=255)

                tgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATaa                                                                           >  1:405469‑M2/8‑91 (MQ=255)

                tgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATaa                                                                           >  1:405397‑M2/8‑91 (MQ=255)

                tgcttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATaa                                                                           <  1:3157420‑M2/84‑1 (MQ=255)

                   ttttTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAAttt                                                                        <  1:1201481‑M2/87‑1 (MQ=255)

                      tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt                                                                     >  1:1238932‑M2/2‑91 (MQ=255)

                      tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt                                                                     <  1:671458‑M2/90‑1 (MQ=255)

                      tTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCtt                                                                     <  1:1554723‑M2/90‑1 (MQ=255)

                       tattatGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTa                                                                    <  1:323603/91‑1 (MQ=255)

                       tattatGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTa                                                                    >  1:3895457/1‑91 (MQ=255)

                          tatGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAAtt                                                                 <  1:522744/91‑1 (MQ=255)

                            tGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAg                                                               >  1:1538167/1‑91 (MQ=255)

                            tGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAg                                                               >  1:3618075/1‑91 (MQ=255)

                             gCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGt                                                              <  1:470216/91‑1 (MQ=255)

                               ttCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTcc                                                            <  1:547057/91‑1 (MQ=255)

                                tCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTccc                                                           >  1:4126386/1‑91 (MQ=255)

                                  aaaGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCAt                                                         <  1:4034414/91‑1 (MQ=255)

                                   aaGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCTCAtt                                                        >  1:1742357/1‑91 (MQ=255)

                                      tCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAac                                                     <  1:94958/91‑1 (MQ=255)

                                       cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                                    >  1:3840142/1‑91 (MQ=255)

                                       cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                                    >  1:1574514/1‑91 (MQ=255)

                                       cAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAaca                                                    <  1:1403663/91‑1 (MQ=255)

                                        aaaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAacac                                                   <  1:2175199/91‑1 (MQ=255)

                                         aaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACg                                                  <  1:751284/91‑1 (MQ=255)

                                         aaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACg                                                  >  1:919391/1‑91 (MQ=255)

                                         aaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACg                                                  >  1:1629196/1‑91 (MQ=255)

                                         aaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACg                                                  >  1:451159/1‑91 (MQ=255)

                                         aaaaaTCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACg                                                  <  1:749309/91‑1 (MQ=255)

                                            aatcggacaaatgttaaagattttactttttcatttgttcgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAAc                                               >  1:1779603‑M2/46‑91 (MQ=255)

                                            aatcggacaaatgttaaagattttactttttcatttgttcgatttATCTGAGAACCACTATAATTTCTTAATTAGTCGCATTAACACGAAc                                               >  1:4147761‑M2/46‑91 (MQ=255)

                                            AATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAAc                                               <  1:1274129‑M1/91‑1 (MQ=255)

                                              TCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTg                                             >  1:3464162‑M1/1‑91 (MQ=255)

                                               cggacaaatgttaaagattttactttttcatttgttcgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGc                                            >  1:1931022‑M2/43‑91 (MQ=255)

                                               CGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGc                                            >  1:1992726‑M1/1‑91 (MQ=255)

                                                GAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCa                                           >  1:341113‑M1/1‑91 (MQ=255)

                                                 aaCAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCAt                                          >  1:2286332/1‑91 (MQ=255)

                                                 aaCAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCAt                                          >  1:2286694/1‑91 (MQ=255)

                                                  aCAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATa                                         <  1:1298794/91‑1 (MQ=255)

                                                   cAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAg                                        >  1:1852464/1‑91 (MQ=255)

                                                   cAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAg                                        >  1:1852938/1‑91 (MQ=255)

                                                      aTGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTa                                     >  1:255388/1‑91 (MQ=255)

                                                       tGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTaa                                    <  1:759293/91‑1 (MQ=255)

                                                       tGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTaa                                    <  1:1787165/91‑1 (MQ=255)

                                                          aaaaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTACCCt                                 >  1:3739137/1‑91 (MQ=255)

                                                          aaaaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCt                                 <  1:213476/91‑1 (MQ=255)

                                                            aaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTa                               <  1:1348901/91‑1 (MQ=255)

                                                            aaGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTa                               <  1:1349049/91‑1 (MQ=255)

                                                            aaGTAAAATCTTTAACAGTTGTCCGATTTATTAGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTa                               <  1:3548111/91‑1 (MQ=255)

                                                             aGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTaa                              >  1:217011/1‑91 (MQ=255)

                                                               tAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAat                            <  1:3389599/91‑1 (MQ=255)

                                                                 aaaTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAatat                          >  1:2908991/1‑91 (MQ=255)

                                                                 aaaTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAatat                          <  1:3930636/91‑1 (MQ=255)

                                                                  aaTCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAAtata                         >  1:1746373/1‑91 (MQ=255)

                                                                    tCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGt                       <  1:3780859/91‑1 (MQ=255)

                                                                      tttAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTg                     <  1:699327/91‑1 (MQ=255)

                                                                      tttAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTg                     <  1:699256/91‑1 (MQ=255)

                                                                       ttAACATTTGTCCGATTTATTTGAGAACCACTATATTTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAGATATAGTTGc                    <  1:3249388/91‑1 (MQ=255)

                                                                       ttAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGc                    <  1:3457501/91‑1 (MQ=255)

                                                                        tAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGcc                   >  1:262907/1‑91 (MQ=255)

                                                                          aCATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCAt                 >  1:2838732/1‑91 (MQ=255)

                                                                            aTTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCaaca               <  1:4093986/91‑4 (MQ=255)

                                                                            aTTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACCGCATAGGTAACCTTAAATATAGTTGCCATGt               <  1:2834504/91‑1 (MQ=255)

                                                                             tttGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGtt              >  1:1189152/1‑91 (MQ=255)

                                                                               tGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTgg            >  1:1386452/1‑91 (MQ=255)

                                                                               tGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTgg            <  1:265219/91‑1 (MQ=255)

                                                                               tGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTgg            <  1:3553376/91‑1 (MQ=255)

                                                                               tGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTgg            >  1:1386573/1‑91 (MQ=255)

                                                                               tGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTgg            >  1:2176147/1‑91 (MQ=255)

                                                                                gTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGc           <  1:3157330/91‑1 (MQ=255)

                                                                                gTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGc           >  1:30090/1‑91 (MQ=255)

                                                                                gTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGc           >  1:30730/1‑91 (MQ=255)

                                                                                gTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGc           >  1:30544/1‑91 (MQ=255)

                                                                                   cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAAt        >  1:912228‑M2/7‑91 (MQ=255)

                                                                                   cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAAt        <  1:2809894‑M2/85‑1 (MQ=255)

                                                                                   cgatttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAAt        >  1:3741257‑M2/7‑91 (MQ=255)

                                                                                     atttATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTg      <  1:2580096‑M2/87‑1 (MQ=255)

                                                                                        tATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGttt   >  1:1144961‑M2/2‑91 (MQ=255)

                                                                                         atttGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTa  <  1:3697125/91‑1 (MQ=255)

                                                                                         atttGAGAACCACTATAATTTCTTAATTAGGCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTa  <  1:519545/91‑1 (MQ=255)

ATCGCCATTGTCCAACTGCTTTTTATTATGCTTCAAAGTCAAAAAATCGAACAAATGAAAAAGTAAAATCTTTAACATTTGTCCGATTTATTTGAGAACCACTATAATTTCTTAATTAGTCCCATTAACACGAACTGCATAGGTAACCTTAAATATAGTTGCCATGTTGGCAATTGTTTA  >  USA300TCH1516_ALE/2252615‑2252794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.