| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2259385 = | 88 (0.890) | 20 (0.230) | 9/140 | NT | 21.4% | intergenic (‑30/+642) | USA300HOU_RS11560/USA300HOU_RS11565 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2259420 = | 70 (0.810) | intergenic (‑65/+607) | USA300HOU_RS11560/USA300HOU_RS11565 | hypothetical protein/hypothetical protein | |||||
AATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2259483‑2259385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgtttctTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGAC > USA300TCH1516_ALE/2259420‑2259509 AATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATA > 1:1945533/1‑91AATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATA > 1:2800955/1‑91 GCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTG < 1:2207609/91‑1 GCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTG < 1:2210953/91‑1 GCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTG > 1:1750740/1‑91 CGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGT < 1:2511087/91‑1 CGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGT < 1:1949434/91‑1 CGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGT > 1:858670/1‑91 GATTAAAATCGCAGTGAACAAGGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTT < 1:141904/91‑1 GATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTT > 1:2844006/1‑91 GATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTT < 1:2302211/91‑1 ATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTT < 1:2955134/91‑1 ATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTT > 1:3415210/1‑91 TTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTC < 1:3015714/91‑1 AAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTga < 1:1702858/91‑3 ATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCC > 1:110735/1‑91 CATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAT > 1:3517935/1‑91 CATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAT > 1:1340186/1‑91 CATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAT > 1:1340216/1‑91 AGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTA > 1:474371/1‑91 AGAAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTA > 1:3129527/1‑91 AAACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAAT > 1:2274436/1‑91 AACACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATC > 1:530266/1‑91 ACTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCA > 1:479517/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 1:1055620/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 1:1055700/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 1:2054150/1‑91 CTAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCAT > 1:2051266/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATT > 1:2212765/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATT > 1:3062341/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATT > 1:1006974/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAACCGCATT > 1:329361/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAACCGCATT > 1:329630/1‑91 TAAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAACCGCATT > 1:331279/1‑91 AAAAGAATGTAATTCATAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTT > 1:445717/1‑91 TAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGC < 1:3443365/91‑1 AGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCG > 1:2373387/1‑91 AGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCG > 1:2357693/1‑91 AGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCG < 1:2138336/91‑1 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC < 1:959544/91‑1 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC > 1:1395833/1‑91 GTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGC > 1:1395734/1‑91 GTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCC > 1:1279196/1‑91 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 1:2157738/91‑1 TCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGG < 1:1043053/91‑1 TTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGAC < 1:3464873/91‑1 AATGCGATTAAAATCGCAGTGAACAAAGGGTATACAGTTGTTCGCATACGCGTCCAACTGCATAAGAAACACTAAAAGAATGTAATTCATAGTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2259483‑2259385‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagtgtttctTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTTAATCGCATTTCCTATAACATTGTAGCGCCCAGGAC > USA300TCH1516_ALE/2259420‑2259509 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |