New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2259385 =88 (0.890)20 (0.230) 9/140 NT 21.4% intergenic (‑30/+642) USA300HOU_RS11560/USA300HOU_RS11565 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE 2259420 = 70 (0.810)intergenic (‑65/+607) USA300HOU_RS11560/USA300HOU_RS11565 hypothetical protein/hypothetical protein

Only 100 of 137 total aligned reads displayed.

CATTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTT  >  USA300TCH1516_ALE/2259295‑2259474
                                                                                          |                                                                                         
 aTTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAg                                                                                          <  1:2387256/91‑1 (MQ=255)
  cctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGa                                                                                         <  1:1043053‑M1/3‑1 (MQ=255)
  cctgggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGa                                                                                         <  1:2157738‑M1/3‑1 (MQ=255)
    aTGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGaaa                                                                                       >  1:263847/1‑91 (MQ=255)
    aTGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGaaa                                                                                       >  1:3795006/1‑91 (MQ=255)
    aTGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGaaa                                                                                       >  1:263738/1‑91 (MQ=255)
     tGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAac                                                                                      <  1:122772/91‑1 (MQ=255)
     tGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAac                                                                                      <  1:123028/91‑1 (MQ=255)
     gggcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAac                                                                                      >  1:1279196‑M1/86‑91 (MQ=255)
      gATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAaca                                                                                     >  1:1102270/1‑91 (MQ=255)
       gcgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAacac                                                                                    >  1:1395734‑M1/84‑91 (MQ=255)
        cgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACt                                                                                   >  1:2373387‑M1/83‑91 (MQ=255)
        cgctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACt                                                                                   >  1:2357693‑M1/83‑91 (MQ=255)
         gctacaatgttataggaaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTa                                                                                  <  1:3443365‑M1/10‑1 (MQ=255)
          ccAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTAt                                                                                 >  1:3070643/1‑91 (MQ=255)
           cAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATg                                                                                <  1:2099685/91‑1 (MQ=255)
              cGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAt                                                                             >  1:4026742/1‑91 (MQ=255)
               ggTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAtt                                                                            <  1:3134158/91‑1 (MQ=255)
               ggTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAtt                                                                            >  1:1836128/1‑91 (MQ=255)
               ggTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAtt                                                                            <  1:3826865/91‑1 (MQ=255)
               ggTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAAtt                                                                            >  1:1835621/1‑91 (MQ=255)
                 ttATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTAc                                                                          >  1:886073/1‑91 (MQ=255)
                 ttATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTAc                                                                          >  1:1888279/1‑91 (MQ=255)
                   atatCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACAt                                                                        <  1:1094646/91‑1 (MQ=255)
                     atCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTc                                                                      <  1:8191/91‑1 (MQ=255)
                     atCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTc                                                                      >  1:2716538/1‑91 (MQ=255)
                       ccACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCtt                                                                    <  1:302705/91‑1 (MQ=255)
                        cacaATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCttt                                                                   <  1:1378694/91‑1 (MQ=255)
                        cacaATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCttt                                                                   >  1:2313622/1‑91 (MQ=255)
                         acaATTCAACCAAAAATAATTCGTTTCTGCTGTCATCATAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCtttt                                                                  >  1:3490752/1‑91 (MQ=255)
                         aaatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCtttt                                                                  >  1:445717‑M1/66‑91 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                 >  1:3816493/1‑91 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                 <  1:2761606/91‑1 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                 <  1:1274968/91‑1 (MQ=255)
                          caATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTa                                                                 <  1:307417/91‑1 (MQ=255)
                          aatgcggttaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTa                                                                 >  1:329630‑M1/65‑91 (MQ=255)
                          aatgcggttaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTa                                                                 >  1:329361‑M1/65‑91 (MQ=255)
                          aatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTa                                                                 >  1:2212765‑M1/65‑91 (MQ=255)
                          aatgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTa                                                                 >  1:1006974‑M1/65‑91 (MQ=255)
                           atgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAg                                                                >  1:1055620‑M1/64‑91 (MQ=255)
                           atgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAg                                                                >  1:2054150‑M1/64‑91 (MQ=255)
                           atgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAg                                                                >  1:2051266‑M1/64‑91 (MQ=255)
                           aaTTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAAAAAATTTTATAAACACTATGAATTACATTCTTTTAg                                                                >  1:4095844/1‑91 (MQ=255)
                            tgcgattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAgt                                                               >  1:479517‑M1/63‑91 (MQ=255)
                             ttCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgtg                                                              <  1:2886014/91‑1 (MQ=255)
                             ttCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAgtg                                                              <  1:507211/91‑1 (MQ=255)
                               gattaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGtt                                                            >  1:530266‑M1/60‑91 (MQ=255)
                               cAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGtt                                                            >  1:2558986/1‑91 (MQ=255)
                                attaaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGttt                                                           >  1:2274436‑M1/59‑91 (MQ=255)
                                aaCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGttt                                                           >  1:2979176/1‑91 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTc                                                          <  1:2882353/91‑1 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTc                                                          >  1:1168703/1‑91 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTc                                                          >  1:1167703/1‑91 (MQ=255)
                                 aCCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATCCTTTTAGTGTTTc                                                          >  1:1545597/1‑91 (MQ=255)
                                  taaaatcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGTTTCt                                                         >  1:3129527‑M1/57‑91 (MQ=255)
                                      atcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATg                                                     >  1:3517935‑M1/53‑91 (MQ=255)
                                      atcgcagtgaacaaagggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATg                                                     >  1:1340186‑M1/53‑91 (MQ=255)
                                       aataatTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGc                                                    >  1:1175475/1‑91 (MQ=255)
                                          aatTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGt                                                 <  1:1418301/91‑1 (MQ=255)
                                            ttCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTg                                               <  1:2676101/91‑1 (MQ=255)
                                             tCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTgg                                              >  1:3656572/1‑91 (MQ=255)
                                                    tgctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTa                                       >  1:3757893/1‑91 (MQ=255)
                                                     gggtatacagttgttcgcatacgcgtccaactgcataAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTAt                                      >  1:110735‑M1/38‑91 (MQ=255)
                                                     gctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTAt                                      >  1:928951/1‑91 (MQ=255)
                                                      ctgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATg                                     <  1:915081/91‑1 (MQ=255)
                                                       tgTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGc                                    >  1:2777582/1‑91 (MQ=255)
                                                        gTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCg                                   >  1:3260428/1‑91 (MQ=255)
                                                        gTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCg                                   <  1:7963/91‑1 (MQ=255)
                                                           aTCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGaac                                <  1:4017166/91‑1 (MQ=255)
                                                             cTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGaacaa                              <  1:1612667/91‑1 (MQ=255)
                                                              ttAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGaacaac                             >  1:1657096/1‑91 (MQ=255)
                                                               tAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACt                            >  1:39684/1‑91 (MQ=255)
                                                               tAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACt                            >  1:2095056/1‑91 (MQ=255)
                                                                 attcTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGt                          <  1:13080/88‑1 (MQ=255)
                                                                 aTACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGt                          <  1:1412356/91‑1 (MQ=255)
                                                                 aTACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGt                          <  1:15527/91‑1 (MQ=255)
                                                                 aTACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGt                          <  1:726671/91‑1 (MQ=255)
                                                                 aTACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGt                          >  1:2903015/1‑91 (MQ=255)
                                                                  tACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGta                         >  1:158606/1‑91 (MQ=255)
                                                                   aCTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGtat                        >  1:2608032/1‑91 (MQ=255)
                                                                      ccTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATAcc                     <  1:121725/91‑1 (MQ=255)
                                                                        ttAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCt                   >  1:3700771/1‑91 (MQ=255)
                                                                         tAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCtt                  >  1:1514087/1‑91 (MQ=255)
                                                                         tAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCtt                  >  1:1461516/1‑91 (MQ=255)
                                                                         tAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCtt                  <  1:2189419/91‑1 (MQ=255)
                                                                            ccTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGt               >  1:2960792/1‑91 (MQ=255)
                                                                             cTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGtt              <  1:3987870/91‑1 (MQ=255)
                                                                              tGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTc             >  1:2626649/1‑91 (MQ=255)
                                                                                aaTAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCAc           >  1:2494218/1‑91 (MQ=255)
                                                                                aaTAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCAc           >  1:2645350/1‑91 (MQ=255)
                                                                                  tAAGTTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTg         <  1:3345021/91‑1 (MQ=255)
                                                                                   aaaTTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGc        <  1:2705132/91‑1 (MQ=255)
                                                                                      ttttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAt     <  1:3109471/91‑1 (MQ=255)
                                                                                        ttAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAtt  <  1:3468195/91‑2 (MQ=255)
                                                                                         tAGAAACTCTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAttaa  <  1:2073751/91‑3 (MQ=255)
                                                                                         tAGAAACGCTATGAATTACATTCGTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAttaa  <  1:1296315/91‑3 (MQ=255)
                                                                                         tAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAttaa  <  1:651785/91‑3 (MQ=255)
                                                                                         tAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAttaa  <  1:448891/91‑3 (MQ=255)
                                                                                         tAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGAttaa  <  1:2597534/91‑3 (MQ=255)
                                                                                         tAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTCTATACCCTTTGTTCACTGCGAtttt  >  1:3849525/1‑91 (MQ=255)
                                                                                          |                                                                                         
CATTATGATTCCAACGGTTATATCCACAATTCAACCAAAAATAATTCGTTTCTGCTGTCATCTTAATACTCCTTAACCTGAATAAATTTTAGAAACACTATGAATTACATTCTTTTAGTGTTTCTTATGCAGTTGGACGCGTATGCGAACAACTGTATACCCTTTGTTCACTGCGATTTT  >  USA300TCH1516_ALE/2259295‑2259474

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.