| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2264711 | 113 (1.150) | 6 (0.070) | 4/138 | NT | 5.1% | coding (666/1092 nt) | USA300HOU_RS11590 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2264731 | 125 (1.470) | coding (686/1092 nt) | USA300HOU_RS11590 | hypothetical protein | |||||
TATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2264611‑2264711‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatgaaaaatTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACGAAACT < USA300TCH1516_ALE/2264731‑2264643 TATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGC > 1:2621290/1‑91 ATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAACGGATTTAAAGCA > 1:1743467/1‑91 GTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATG < 1:3334042/91‑1 GTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATG > 1:1395215/1‑91 GTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATG < 1:41627/91‑1 GTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATG > 1:2531032/1‑91 GTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATG > 1:2154373/1‑91 TAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAA > 1:2260190/1‑91 AATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAA > 1:2681701/1‑91 TACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAA > 1:2290593/1‑91 TACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAA > 1:229671/1‑91 TACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAA < 1:2087580/91‑1 TTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATTTGAAAAATGTTTTTTGACCATTT < 1:2731195/91‑1 TTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATTTGAAAAATGTTTTTTGACCATTT < 1:3003013/91‑1 TCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATTTGAAAAATGTTTTTTGACCATTTTT < 1:2691767/91‑1 TCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATTTGAAAAATGTTTTTTGACCATTTTT < 1:1127495/91‑1 GTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATTTGAAAAATGTTTTTTGACCATTTTTCA < 1:3241200/91‑1 TTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATTTGAAAAATGTTTTTTGACCATTTTTCAT < 1:2410877/91‑1 AATGAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCA > 1:1253965/1‑91 ATGAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAA < 1:206529/91‑1 ATGAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAA < 1:206214/91‑1 ATGAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAA > 1:1813953/1‑91 GAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACG < 1:2001034/91‑1 GAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACG < 1:3101895/91‑1 GAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACG < 1:3102131/91‑1 GAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACG < 1:3102270/91‑1 GAAAAATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGGGTGTTTTTACTTTATCGTTAGTTGATTCAACG < 1:995561/91‑1 ATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACGAAACT > 1:1802080/1‑91 ATTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACGAAACT > 1:1178988/1‑91 TATTGTTAATACCTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2264611‑2264711‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caatgaaaaatTTGAAAAATGTTTTTTGACCATTTTTCATTGCTTTAAATCCATTAGCTAAGTGTGTTTTTACTTTATCGTTAGTTGATTCAACGAAACT < USA300TCH1516_ALE/2264731‑2264643 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |