BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2264711	113 (1.150)	6 (0.070)	4/138	NT	5.1%	coding (666/1092 nt)	USA300HOU_RS11590	hypothetical protein
*	?	USA300TCH1516_ALE	= 2264731	125 (1.470)	6 (0.070)	4/138	NT	5.1%	coding (686/1092 nt)	USA300HOU_RS11590	hypothetical protein

Only 100 of 161 total aligned reads displayed.

CTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATT  >  USA300TCH1516_ALE/2264623‑2264801

cTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATgg                                                                                          >  1:2188693/1‑91 (MQ=255)

 tATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGt                                                                                         >  1:3924986/1‑91 (MQ=255)

  aTTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTc                                                                                        >  1:3725604/1‑91 (MQ=255)

  aTTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTc                                                                                        >  1:2402428/1‑91 (MQ=255)

      tCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCaaaa                                                                                    <  1:2348570/91‑1 (MQ=255)

       cAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCaaaaa                                                                                   >  1:1508893/1‑91 (MQ=255)

        aaCTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCaaaaaa                                                                                  >  1:1129992/1‑91 (MQ=255)

         aCTTTATGACTAGTTTCGTTGAATCAACTAACGATAATGTAAAAACACACTAAGCTAATGGATTTCAAGCAATGAAAAATGGTCAGAAAAc                                                                                 >  1:3854395/1‑91 (MQ=255)

         aCTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAAc                                                                                 >  1:693516/1‑91 (MQ=255)

          cTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACa                                                                                >  1:2457642/1‑91 (MQ=255)

           tttATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACAt                                                                               <  1:1996223/91‑1 (MQ=255)

              aTGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACAtttt                                                                            <  1:1979112/91‑1 (MQ=255)

              aTGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACAtttt                                                                            <  1:1979024/91‑1 (MQ=255)

               tGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACAttttt                                                                           >  1:2142252/1‑91 (MQ=255)

               tGACTAGTTTCGATGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACAttttt                                                                           >  1:3172498/1‑91 (MQ=255)

                  cTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCaa                                                                        <  1:1185778/91‑1 (MQ=255)

                    aGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAat                                                                      >  1:1178988‑M2/1‑89 (MQ=255)

                    aGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAat                                                                      >  1:1802080‑M2/1‑89 (MQ=255)

                      tttCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATttgaaaaatgttttttgaccattt                                                                    <  1:2731195‑M1/91‑25 (MQ=255)

                        tCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATttgaaaaatgttttttgaccattttt                                                                  <  1:1127495‑M1/91‑27 (MQ=255)

                         cGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttc                                                                 <  1:2001034‑M2/91‑8 (MQ=255)

                         cGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttc                                                                 <  1:3101895‑M2/91‑8 (MQ=255)

                           ttGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttcat                                                               >  1:1813953‑M2/1‑82 (MQ=255)

                           ttGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttcat                                                               <  1:206214‑M2/91‑10 (MQ=255)

                            tGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttcatt                                                              >  1:1253965‑M2/1‑81 (MQ=255)

                              aaTCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGTAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTgg                                                            <  1:3517956/91‑1 (MQ=255)

                              aaTCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTgg                                                            <  1:206903/91‑1 (MQ=255)

                              aaTCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTgg                                                            <  1:3797754/91‑1 (MQ=255)

                                 cAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAAt                                                         <  1:2513627/91‑1 (MQ=255)

                                    cTAACTATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACt                                                      <  1:893954/91‑1 (MQ=255)

                                    cTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACt                                                      >  1:3693698/1‑91 (MQ=255)

                                      aaCGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtat                                                    >  1:2859353/1‑91 (MQ=255)

                                       aCGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtatt                                                   >  1:862244/1‑91 (MQ=255)

                                         gATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtattat                                                 <  1:681317/91‑1 (MQ=255)

                                         gATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtattat                                                 >  1:3433361/1‑91 (MQ=255)

                                           tAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTAttatta                                               >  1:51760/1‑91 (MQ=255)

                                            aaaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaa                                              >  1:1312519/1‑91 (MQ=255)

                                            aaaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaa                                              >  1:1930870/1‑91 (MQ=255)

                                             aaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaaa                                             >  1:3303824/1‑91 (MQ=255)

                                                  aaaaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTaa                                        >  1:1850064/1‑91 (MQ=255)

                                                  aaaaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTaa                                        >  1:1127897/1‑91 (MQ=255)

                                                    aaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAatt                                      >  1:31223/1‑91 (MQ=255)

                                                       acacTTCGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattatt                                   <  1:899238/91‑1 (MQ=255)

                                                       acacTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattatt                                   >  1:697879/1‑91 (MQ=255)

                                                       acacTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattatt                                   >  1:3972050/1‑91 (MQ=255)

                                                        cacTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattatta                                  <  1:415676/91‑1 (MQ=255)

                                                         acTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattattat                                 >  1:3436365/1‑91 (MQ=255)

                                                          cTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattattatt                                >  1:1679837/1‑91 (MQ=255)

                                                           ttAGCTAATTGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattt                               <  1:3975345/91‑1 (MQ=255)

                                                           ttAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattt                               <  1:704255/91‑1 (MQ=255)

                                                              gCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttat                            <  1:3165322/91‑1 (MQ=255)

                                                              gCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttat                            >  1:1350184/1‑91 (MQ=255)

                                                               cTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttatt                           >  1:1582057/1‑91 (MQ=255)

                                                                  aTGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaa                        >  1:2415033/1‑91 (MQ=255)

                                                                  aTGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaa                        <  1:2844178/91‑1 (MQ=255)

                                                                   atcttttAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaaa                       <  1:3095852/87‑1 (MQ=255)

                                                                    ggATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaaaa                      <  1:1922044/91‑1 (MQ=255)

                                                                    ggATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaaaa                      <  1:2381637/91‑1 (MQ=255)

                                                                     gATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAac                     <  1:3482104/91‑1 (MQ=255)

                                                                      aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                    <  1:1678406/91‑1 (MQ=255)

                                                                      aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                    <  1:1099916/91‑1 (MQ=255)

                                                                      aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                    >  1:3885072/1‑91 (MQ=255)

                                                                      aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                    <  1:1100132/91‑1 (MQ=255)

                                                                      aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                    >  1:1957307/1‑91 (MQ=255)

                                                                       tttAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAacac                   >  1:3147988/1‑91 (MQ=255)

                                                                       tttAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAacac                   <  1:49926/91‑1 (MQ=255)

                                                                         tAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCt                 <  1:3079301/91‑1 (MQ=255)

                                                                         tAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCt                 >  1:807431/1‑91 (MQ=255)

                                                                          aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                >  1:3823504/1‑91 (MQ=255)

                                                                          aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                >  1:2819153/1‑91 (MQ=255)

                                                                          aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                <  1:3623613/91‑1 (MQ=255)

                                                                          aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                >  1:1389233/1‑91 (MQ=255)

                                                                             gCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTg             >  1:779669/1‑91 (MQ=255)

                                                                             gCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTg             >  1:320559/1‑91 (MQ=255)

                                                                             gCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTg             <  1:3276605/91‑1 (MQ=255)

                                                                              cAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTgg            >  1:1045298/1‑91 (MQ=255)

                                                                              cAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTgg            >  1:1045152/1‑91 (MQ=255)

                                                                               aaTGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGt           <  1:1721016/91‑1 (MQ=255)

                                                                               aaTGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGt           <  1:1721050/91‑1 (MQ=255)

                                                                               aaTGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGt           <  1:2584092/91‑1 (MQ=255)

                                                                                aTGAAAAATttgaaaaatgttttttgaccatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaa          <  1:206529‑M1/91‑83 (MQ=255)

                                                                                aTGAAAAATGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaa          <  1:2410877‑M2/91‑63 (MQ=255)

                                                                                 tGAAAAATGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaac         <  1:3241200‑M2/91‑64 (MQ=255)

                                                                                  gAAAAATttgaaaaatgttttttgaccatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacg        <  1:3102270‑M1/91‑85 (MQ=255)

                                                                                  gAAAAATttgaaaaatgttttttgaccatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacg        <  1:3102131‑M1/91‑85 (MQ=255)

                                                                                  gAAAAATttgaaaaatgttttttgaccatttttcattgctttaaatccattagctaagggtgtttttactttatcgttagttgattcaacg        <  1:995561‑M1/91‑85 (MQ=255)

                                                                                  gAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTAc        <  1:1954314/91‑1 (MQ=255)

                                                                                   aaaaaTGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacga       <  1:2691767‑M2/91‑66 (MQ=255)

                                                                                   aaaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACt       <  1:557645/91‑1 (MQ=255)

                                                                                   aaaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACt       <  1:1901388/91‑1 (MQ=255)

                                                                                   aaaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACt       >  1:2951775/1‑91 (MQ=255)

                                                                                    aaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACtt      <  1:2019215/91‑1 (MQ=255)

                                                                                    aaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACtt      <  1:755623/91‑1 (MQ=255)

                                                                                    aaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACtt      <  1:2942770/91‑1 (MQ=255)

                                                                                     aaaTGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacgaaa     <  1:3003013‑M2/91‑68 (MQ=255)

                                                                                     aaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTg     <  1:4052186/91‑1 (MQ=255)

                                                                                     aaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTg     >  1:1323567/1‑91 (MQ=255)

                                                                                       aTttgaaaaatgttttttgaccatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacgaaact   >  1:1178988‑M1/1‑2 (MQ=255)

                                                                                        tGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGAtt  <  1:4093103/91‑1 (MQ=255)

                                                                                        tGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGAtt  <  1:1424234/91‑1 (MQ=255)

CTATTTTCAACTTTATGACTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATT  >  USA300TCH1516_ALE/2264623‑2264801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.