BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2264711	113 (1.150)	6 (0.070)	4/138	NT	5.1%	coding (666/1092 nt)	USA300HOU_RS11590	hypothetical protein
*	?	USA300TCH1516_ALE	= 2264731	125 (1.470)	6 (0.070)	4/138	NT	5.1%	coding (686/1092 nt)	USA300HOU_RS11590	hypothetical protein

Only 100 of 152 total aligned reads displayed.

CTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCAC  >  USA300TCH1516_ALE/2264641‑2264820

cTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCaa                                                                                           <  1:1185777/91‑1 (MQ=255)

  aGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAat                                                                                         >  1:1802080‑M2/1‑89 (MQ=255)

       cGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttc                                                                                    <  1:3102131‑M2/91‑8 (MQ=255)

       cGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttc                                                                                    <  1:3101895‑M2/91‑8 (MQ=255)

       cGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttc                                                                                    <  1:2001034‑M2/91‑8 (MQ=255)

         ttGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttcat                                                                                  <  1:206214‑M2/91‑10 (MQ=255)

         ttGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttcat                                                                                  <  1:206529‑M2/91‑10 (MQ=255)

          tGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAatttttcatt                                                                                 >  1:1253965‑M2/1‑81 (MQ=255)

            aaTCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTgg                                                                               <  1:3797754/91‑1 (MQ=255)

             aTCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTCTTCATTGGa                                                                              >  1:3974810/1‑91 (MQ=255)

              tCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGaa                                                                             >  1:244256/1‑91 (MQ=255)

               cAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAAt                                                                            <  1:2513627/91‑1 (MQ=255)

               cAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAAt                                                                            <  1:759158/91‑1 (MQ=255)

                  cTAACTATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACt                                                                         <  1:893954/91‑1 (MQ=255)

                  cTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACt                                                                         >  1:3693698/1‑91 (MQ=255)

                    aaCGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtat                                                                       >  1:2859353/1‑91 (MQ=255)

                       gATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtattat                                                                    <  1:70334/91‑1 (MQ=255)

                       gATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtattat                                                                    <  1:696744/91‑1 (MQ=255)

                       gATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACtattat                                                                    <  1:681317/91‑1 (MQ=255)

                          aaaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaa                                                                 >  1:1312519/1‑91 (MQ=255)

                          aaaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaa                                                                 >  1:1935564/1‑91 (MQ=255)

                          aaaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaa                                                                 >  1:1930870/1‑91 (MQ=255)

                           aaGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTaaa                                                                >  1:3303824/1‑91 (MQ=255)

                            aGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAAc                                                               >  1:2369435/1‑91 (MQ=255)

                                aaaaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTaa                                                           >  1:1127897/1‑91 (MQ=255)

                                aaaaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTaa                                                           >  1:1850064/1‑91 (MQ=255)

                                 aaaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAat                                                          >  1:640727/1‑91 (MQ=255)

                                  aaCACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAatt                                                         >  1:31223/1‑91 (MQ=255)

                                   acacacTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAatta                                                        >  1:913023/1‑91 (MQ=255)

                                    cacacTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattat                                                       <  1:823511/91‑1 (MQ=255)

                                      cacTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattatta                                                     <  1:415676/91‑1 (MQ=255)

                                       acTTAGCTAATGGATTTAAAGCAATGAAAAGTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattattat                                                    >  1:1685059/1‑91 (MQ=255)

                                       acTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattattat                                                    >  1:3436365/1‑91 (MQ=255)

                                        cTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAattattatt                                                   >  1:1679837/1‑91 (MQ=255)

                                         ttAGCTAATTGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattt                                                  <  1:3975345/91‑1 (MQ=255)

                                            gCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttat                                               <  1:3165322/91‑1 (MQ=255)

                                            gCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttat                                               >  1:2309934/1‑91 (MQ=255)

                                            gCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttat                                               <  1:503568/91‑1 (MQ=255)

                                             cTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTAttattttatt                                              >  1:1582057/1‑91 (MQ=255)

                                                aTGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaa                                           >  1:2415033/1‑91 (MQ=255)

                                                aTGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaa                                           <  1:2844178/91‑1 (MQ=255)

                                                  ggATTTAAATCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTaaaa                                         <  1:3963873/91‑1 (MQ=255)

                                                   gATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAac                                        <  1:3482104/91‑1 (MQ=255)

                                                    aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                                       >  1:2111634/1‑91 (MQ=255)

                                                    aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                                       >  1:1957307/1‑91 (MQ=255)

                                                    aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                                       >  1:1957346/1‑91 (MQ=255)

                                                    aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                                       <  1:1678406/91‑1 (MQ=255)

                                                    aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                                       <  1:1099916/91‑1 (MQ=255)

                                                    aTTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAaca                                       <  1:1100132/91‑1 (MQ=255)

                                                     tttAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAacac                                      <  1:49926/91‑1 (MQ=255)

                                                     tttAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAacac                                      >  1:3147988/1‑91 (MQ=255)

                                                       tAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCt                                    <  1:3079301/91‑1 (MQ=255)

                                                       tAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCt                                    >  1:807431/1‑91 (MQ=255)

                                                        aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                                   <  1:3623613/91‑1 (MQ=255)

                                                        aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                                   >  1:2819153/1‑91 (MQ=255)

                                                        aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                                   >  1:3823504/1‑91 (MQ=255)

                                                        aaaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTg                                   >  1:1389233/1‑91 (MQ=255)

                                                         aaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGt                                  >  1:3619286/1‑91 (MQ=255)

                                                         aaGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGt                                  <  1:1357253/91‑1 (MQ=255)

                                                           gCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTg                                >  1:779669/1‑91 (MQ=255)

                                                           gCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTg                                >  1:320559/1‑91 (MQ=255)

                                                            cAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTgg                               >  1:1045298/1‑91 (MQ=255)

                                                            cAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTgg                               >  1:1045152/1‑91 (MQ=255)

                                                             aaTGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGt                              <  1:1721050/91‑1 (MQ=255)

                                                             aaTGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGt                              <  1:2584092/91‑1 (MQ=255)

                                                               tGAAAAATGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaac                            <  1:3241200‑M2/91‑64 (MQ=255)

                                                                gAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTAc                           <  1:1851285/91‑1 (MQ=255)

                                                                 aaaaaTGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacga                          <  1:1127495‑M2/91‑66 (MQ=255)

                                                                 aaaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACt                          <  1:557645/91‑1 (MQ=255)

                                                                  aaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACtt                         <  1:755623/91‑1 (MQ=255)

                                                                  aaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACtt                         <  1:2942770/91‑1 (MQ=255)

                                                                  aaaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACtt                         <  1:2019215/91‑1 (MQ=255)

                                                                   aaaTGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacgaaa                        <  1:3003013‑M2/91‑68 (MQ=255)

                                                                   aaaTGGTCAAAAAACATTTTTCAAatttttcattgctttaaatccattagctaagtgtgtttttactttatcgttagttgattcaacgaaa                        <  1:2731195‑M2/91‑68 (MQ=255)

                                                                   aaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTg                        >  1:1323567/1‑91 (MQ=255)

                                                                   aaaTGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTg                        <  1:4052186/91‑1 (MQ=255)

                                                                      tGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGAtt                     <  1:4093103/91‑1 (MQ=255)

                                                                      tGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGAtt                     <  1:1424234/91‑1 (MQ=255)

                                                                        gTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTc                   >  1:3293267/1‑91 (MQ=255)

                                                                        gTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTc                   <  1:3704628/91‑1 (MQ=255)

                                                                        gTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTc                   >  1:2225654/1‑91 (MQ=255)

                                                                          cAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAt                 >  1:4022185/1‑91 (MQ=255)

                                                                          cAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAt                 <  1:702670/91‑1 (MQ=255)

                                                                           aaaaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAtt                <  1:2400552/91‑1 (MQ=255)

                                                                           aaaaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAtt                >  1:2954834/1‑91 (MQ=255)

                                                                           aaaaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAtt                <  1:2400487/91‑1 (MQ=255)

                                                                           aaaaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAtt                >  1:804154/1‑91 (MQ=255)

                                                                            aaaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAttt               <  1:1905322/91‑1 (MQ=255)

                                                                            aaaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCAttt               <  1:1182841/91‑1 (MQ=255)

                                                                             aaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTa              <  1:1486982/91‑1 (MQ=255)

                                                                             aaaaCATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTa              <  1:3148119/91‑1 (MQ=255)

                                                                                 cATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATAc          <  1:3261293/91‑1 (MQ=255)

                                                                                 cATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATAc          >  1:3211548/1‑91 (MQ=255)

                                                                                 cATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATAc          <  1:1323444/91‑1 (MQ=255)

                                                                                  aTTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACg         >  1:874927/1‑91 (MQ=255)

                                                                                   tttttCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGc        <  1:3897657/91‑1 (MQ=255)

                                                                                   tttttCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGc        <  1:2243103/91‑1 (MQ=255)

                                                                                    ttttCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGCa       <  1:2088255/91‑1 (MQ=255)

                                                                                     tttCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGCaa      <  1:3837447/91‑1 (MQ=255)

                                                                                         aaaTTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCAc  <  1:3091551/91‑1 (MQ=255)

CTAGTTTCGTTGAATCAACTAACGATAAAGTAAAAACACACTTAGCTAATGGATTTAAAGCAATGAAAAATGGTCAAAAAACATTTTTCAAATTTTTCATTGGAATACTATTATTAAACTTAATTATTATTTTATTTAAAACACCTGTTGGTTACTTGATTTCATTTAATACGCAATCAC  >  USA300TCH1516_ALE/2264641‑2264820

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.