| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2288634 = | 114 (1.160) | 8 (0.090) | 4/138 | NT | 8.6% | coding (45/933 nt) | cdaR | CdaA regulatory protein CdaR |
| ? | USA300TCH1516_ALE | 2288701 = | 72 (0.850) | coding (789/810 nt) | cdaA | Cyclic di‑AMP synthase CdaA | |||||
GTTGCTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2288734‑2288634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCGA > USA300TCH1516_ALE/2288701‑2288790 GTTGCTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGC < 1:105873/91‑1 TTGCTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCC < 1:731089/91‑1 TTGCTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCC > 1:3521013/1‑91 TGCTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCT < 1:1840594/91‑1 CTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTT < 1:294704/91‑1 CTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTT > 1:964865/1‑91 GCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTT > 1:2849742/1‑91 GCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTT > 1:2850521/1‑91 GCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTT > 1:3055974/1‑91 GCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTT > 1:1569343/1‑91 TGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTT > 1:2565648/1‑91 AGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCA > 1:2483819/1‑91 AGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCA > 1:495755/1‑91 AAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAG > 1:112937/1‑91 GGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAA > 1:2859112/1‑91 GGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAA > 1:2859014/1‑91 GTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTC > 1:3948759/1‑91 GTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTC > 1:3948796/1‑91 GTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTC > 1:3948959/1‑91 CTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAA < 1:1739572/91‑1 TTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAAT < 1:4135537/91‑1 TCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGT > 1:1407373/1‑91 CTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTT > 1:3917404/1‑91 TTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTAC < 1:334138/91‑1 TTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACC < 1:1353334/91‑1 TGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCG < 1:2827104/91‑1 TGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCG < 1:61998/91‑1 GAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCGA < 1:954789/91‑1 GTTGCTTGCTGAACATTGGTTTGGCACACGCTTTCAAAAGAAAGGTGTGAAATAATATGCTAGAAAGTAAATGGGGCTTGAGATTTATTGCCTTTCTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2288734‑2288634‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCGA > USA300TCH1516_ALE/2288701‑2288790 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |