BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2288634 =	114 (1.160)	8 (0.090)	4/138	NT	8.6%	coding (45/933 nt)	cdaR	CdaA regulatory protein CdaR
*	?	USA300TCH1516_ALE	2288701 =	72 (0.850)	8 (0.090)	4/138	NT	8.6%	coding (789/810 nt)	cdaA	Cyclic di‑AMP synthase CdaA

Only 100 of 106 total aligned reads displayed.

CAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCGA  >  USA300TCH1516_ALE/2288612‑2288790

cAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGaa                                                                                          <  1:2622992/91‑1 (MQ=255)

cAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGaa                                                                                          <  1:4058653/91‑1 (MQ=255)

 aGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGaaa                                                                                         <  1:1378321/91‑1 (MQ=255)

    tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCg                                                                                      <  1:1813067/91‑1 (MQ=255)

    tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCg                                                                                      <  1:2728609/91‑1 (MQ=255)

    tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCg                                                                                      >  1:4060298/1‑91 (MQ=255)

    tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCg                                                                                      <  1:319251/91‑1 (MQ=255)

    tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCg                                                                                      <  1:1840994/91‑1 (MQ=255)

     aaaaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCgt                                                                                     >  1:2899328/1‑91 (MQ=255)

     aaaaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATAATATTTCACACCTTTCTTTTGAAAGCgt                                                                                     <  1:1831343/91‑1 (MQ=255)

      aaaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCgtg                                                                                    >  1:1629614/1‑91 (MQ=255)

       aaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCgtgt                                                                                   >  1:3490266/1‑91 (MQ=255)

         aGAAAAACAATGTCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTATGc                                                                                 >  1:3209517/1‑91 (MQ=255)

         aGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGc                                                                                 <  1:2345238/91‑1 (MQ=255)

         aGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGc                                                                                 <  1:3962687/91‑1 (MQ=255)

          gAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGcc                                                                                >  1:51612/1‑91 (MQ=255)

             aaaCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCaaa                                                                             >  1:2853967/1‑91 (MQ=255)

             aaaCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCaaa                                                                             <  1:434633/91‑1 (MQ=255)

              aaCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAAc                                                                            >  1:1563061/1‑91 (MQ=255)

              aaCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAAc                                                                            >  1:2098065/1‑91 (MQ=255)

               aCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTTACACCTTTCTTTTGAAAGCGTGTGCCAAAcc                                                                           <  1:2442074/91‑1 (MQ=255)

               aCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAAcc                                                                           >  1:2346613/1‑91 (MQ=255)

                cAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCa                                                                          >  1:1912143/1‑91 (MQ=255)

                 aaTGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCaa                                                                         >  1:209971/1‑91 (MQ=255)

                  aTGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAAt                                                                        >  1:1603629/1‑91 (MQ=255)

                       AAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCa                                                                   >  1:2565648‑M1/1‑91 (MQ=255)

                         AAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCagc                                                                 >  1:2850521‑M1/1‑91 (MQ=255)

                         AAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCagc                                                                 >  1:2849742‑M1/1‑91 (MQ=255)

                         AAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCagc                                                                 >  1:1569343‑M1/1‑91 (MQ=255)

                         AAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCagc                                                                 >  1:3055974‑M1/1‑91 (MQ=255)

                          agaaaggtgtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCagca                                                                >  1:495755‑M2/64‑91 (MQ=255)

                          agaaaggtgtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCagca                                                                >  1:2483819‑M2/64‑91 (MQ=255)

                            aaaggtgtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCagcaag                                                              >  1:112937‑M2/62‑91 (MQ=255)

                            AAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCagcaag                                                              <  1:294704‑M1/91‑1 (MQ=255)

                              AGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCagcaagca                                                            <  1:1840594‑M1/91‑1 (MQ=255)

                               ggtgtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCAgcaagcaa                                                           >  1:2859014‑M2/59‑91 (MQ=255)

                               ggtgtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCAgcaagcaa                                                           >  1:2859112‑M2/59‑91 (MQ=255)

                               GGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAgcaagcaa                                                           >  1:3521013‑M1/1‑91 (MQ=255)

                               GGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAgcaagcaa                                                           <  1:731089‑M1/91‑1 (MQ=255)

                                GCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAAc                                                          <  1:105873‑M1/91‑1 (MQ=255)

                                  gtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAActc                                                        >  1:3948759‑M2/56‑91 (MQ=255)

                                  gtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAActc                                                        >  1:3948796‑M2/56‑91 (MQ=255)

                                  gtgaaataatatgctagaaagtaaatggggcttgagatttattgcctttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAActc                                                        >  1:3948959‑M2/56‑91 (MQ=255)

                                     aaaTCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTc                                                     <  1:3894792/91‑1 (MQ=255)

                                     aaaTCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTc                                                     <  1:3953846/91‑1 (MQ=255)

                                     aaaTCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTc                                                     <  1:3432991/91‑1 (MQ=255)

                                      aaTCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCa                                                    <  1:1504210/91‑1 (MQ=255)

                                      aaTCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCa                                                    <  1:1503352/91‑1 (MQ=255)

                                       aTCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCaa                                                   <  1:574687/91‑1 (MQ=255)

                                          tcAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCaaaaa                                                >  1:220579/1‑91 (MQ=255)

                                           cAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAt                                               >  1:1185588/1‑91 (MQ=255)

                                           cAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAt                                               >  1:2498091/1‑91 (MQ=255)

                                           cAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAt                                               >  1:2506277/1‑91 (MQ=255)

                                           cAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAt                                               >  1:2504451/1‑91 (MQ=255)

                                           cAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAt                                               >  1:2498408/1‑91 (MQ=255)

                                            aaGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAtt                                              >  1:620454/1‑91 (MQ=255)

                                            aaGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAtt                                              >  1:1704469/1‑91 (MQ=255)

                                            aaGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAtt                                              <  1:2617157/91‑1 (MQ=255)

                                            aaGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAtt                                              <  1:1336342/91‑1 (MQ=255)

                                            aaGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAtt                                              <  1:1337598/91‑1 (MQ=255)

                                            aaGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAtt                                              <  1:2284718/91‑1 (MQ=255)

                                             ggCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAAttt                                             >  1:2630547/2‑91 (MQ=255)

                                              gCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTc                                            <  1:1564349/91‑1 (MQ=255)

                                                cccATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGt                                          <  1:3578717/91‑1 (MQ=255)

                                                cccATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGt                                          >  1:2784658/1‑91 (MQ=255)

                                                 ccATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGtt                                         >  1:920468/1‑91 (MQ=255)

                                                    tttACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGa                                      >  1:2096409/1‑91 (MQ=255)

                                                    tttACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGa                                      >  1:2096425/1‑91 (MQ=255)

                                                     ttACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGaa                                     >  1:2355570/1‑91 (MQ=255)

                                                     ttACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGaa                                     >  1:2355735/1‑91 (MQ=255)

                                                      tACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGaaa                                    <  1:1011971/91‑1 (MQ=255)

                                                       aCTTTCTAGCATATTATTTCACACCGTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAAt                                   <  1:3868543/91‑1 (MQ=255)

                                                        cTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATg                                  <  1:489338/91‑1 (MQ=255)

                                                          ttCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGtc                                >  1:901474/1‑91 (MQ=255)

                                                          ttCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGtc                                <  1:1867307/91‑1 (MQ=255)

                                                          ttCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTACGTTTGAAATGtc                                >  1:4140295/1‑91 (MQ=255)

                                                           tCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGtct                               >  1:88211/1‑91 (MQ=255)

                                                            cTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGtctc                              >  1:2872572/1‑91 (MQ=255)

                                                             tAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCtcg                             >  1:1713075/1‑91 (MQ=255)

                                                                tatcttattTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCtcgtcg                          <  1:2125616/87‑1 (MQ=255)

                                                                 atatTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTcgtcgt                         <  1:1785207/91‑1 (MQ=255)

                                                                    ttattTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAAt                      >  1:3772178/1‑91 (MQ=255)

                                                                    ttattTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCATAAt                      >  1:3454750/1‑91 (MQ=255)

                                                                     tattTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAAtt                     <  1:3378663/91‑1 (MQ=255)

                                                                      attTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAAttt                    <  1:2045262/91‑1 (MQ=255)

                                                                      attTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAAttt                    >  1:2120981/1‑91 (MQ=255)

                                                                      attTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAAttt                    <  1:571034/91‑1 (MQ=255)

                                                                       tttCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAAtttt                   <  1:2948185/91‑1 (MQ=255)

                                                                           acacCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCAt               <  1:695096/91‑1 (MQ=255)

                                                                            cacCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATc              <  1:503620/91‑1 (MQ=255)

                                                                            cacCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATc              >  1:1549942/1‑91 (MQ=255)

                                                                               ctttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCaaa           <  1:1739572‑M2/81‑1 (MQ=255)

                                                                                tttcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAAt          <  1:4135537‑M2/82‑1 (MQ=255)

                                                                                  tcttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGt        >  1:1407373‑M2/8‑91 (MQ=255)

                                                                                   cttttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGtt       >  1:3917404‑M2/7‑91 (MQ=255)

                                                                                     tttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTAc     <  1:334138‑M2/87‑1 (MQ=255)

                                                                                      ttgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTAcc    <  1:1353334‑M2/88‑1 (MQ=255)

                                                                                       tgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCg   <  1:2827104‑M2/89‑1 (MQ=255)

                                                                                       tgAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCg   <  1:61998‑M2/89‑1 (MQ=255)

                                                                                        gAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCGa  <  1:954789‑M2/90‑1 (MQ=255)

CAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACCTTTCTTTTGAAAGCGTGTGCCAAACCAATGTTCAGCAAGCAACTCTTCAAAAATTTCGTTTGAAATGTCTCGTCGTAATTTTCCATCAAATGTTACCGA  >  USA300TCH1516_ALE/2288612‑2288790

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.