| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2288634 = | 114 (1.160) | 8 (0.090) | 4/138 | NT | 8.6% | coding (45/933 nt) | cdaR | CdaA regulatory protein CdaR |
| ? | USA300TCH1516_ALE | 2288701 = | 72 (0.850) | coding (789/810 nt) | cdaA | Cyclic di‑AMP synthase CdaA | |||||
Only 100 of 138 total aligned reads displayed.
TTGAATCGTTTTACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCAAACCAAT > USA300TCH1516_ALE/2288544‑2288720 | ttGAATCGTTTTACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGcc < 1:3413653/91‑1 (MQ=255) cggtaacatttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCa < 1:61998‑M1/2‑1 (MQ=255) ggtaacatttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCaa < 1:1353334‑M1/3‑1 (MQ=255) gAATCGTTTTACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCaa < 1:2133027/91‑1 (MQ=255) gtaacatttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCaaa < 1:334138‑M1/4‑1 (MQ=255) aacatttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCAaaag > 1:3917404‑M1/86‑91 (MQ=255) cGTTTTACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAacaga > 1:1433727/1‑91 (MQ=255) cGTTTTACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAaaaga > 1:1436470/1‑91 (MQ=255) acatttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCAaaaga > 1:1407373‑M1/85‑91 (MQ=255) ttttACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAaaagaaa > 1:1339430/1‑91 (MQ=255) atttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCAaaagaaa < 1:4135537‑M1/9‑1 (MQ=255) tttgatggaaaattacgacgagacatttcaaacgaaatttttgaagagttgcttgctgaacattggtttggcacacgctttCAaaagaaag < 1:1739572‑M1/10‑1 (MQ=255) aCTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCa > 1:2692519/1‑91 (MQ=255) aCTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCa > 1:3208302/1‑91 (MQ=255) cTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCaa > 1:2484292/1‑91 (MQ=255) aGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATa < 1:1034808/91‑1 (MQ=255) gACTTTTGACCAAGACTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATaa > 1:3535854/1‑91 (MQ=255) aCTTTTGACCAAGATGACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAACAAGAAAAACAATGCCAAAAGAAAGGCAATaaa > 1:3540992/1‑91 (MQ=255) cTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAAt < 1:31730/91‑1 (MQ=255) ttttGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAAtc < 1:2993742/91‑1 (MQ=255) ttGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAAtctc > 1:3465063/1‑91 (MQ=255) tGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCa > 1:1188224/1‑91 (MQ=255) tGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCa < 1:1974709/91‑1 (MQ=255) tGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCa > 1:3010076/1‑91 (MQ=255) tGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCa < 1:2319958/91‑1 (MQ=255) gACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCaa > 1:3721213/1‑91 (MQ=255) gACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCaa > 1:3012601/1‑91 (MQ=255) ccAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGc > 1:2953255/1‑91 (MQ=255) ccAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGc > 1:206565/1‑91 (MQ=255) ccAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGc > 1:203145/1‑91 (MQ=255) aGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGcccc < 1:553148/91‑1 (MQ=255) gATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGACCCa < 1:3278850/91‑1 (MQ=255) aTTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCAt < 1:2886760/91‑1 (MQ=255) ttACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCTAGCCCCAtt < 1:2089563/91‑1 (MQ=255) ttACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCAtt < 1:2428314/91‑1 (MQ=255) aCCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTa > 1:1516768/1‑91 (MQ=255) aCCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTa < 1:3956173/91‑1 (MQ=255) cAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACt > 1:1595975/1‑91 (MQ=255) aGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACtt < 1:2126386/91‑1 (MQ=255) tAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAg > 1:3759078/1‑91 (MQ=255) tAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAg > 1:914634/1‑91 (MQ=255) aaaGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGc < 1:4007131/91‑1 (MQ=255) aaaGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGc < 1:3692431/91‑1 (MQ=255) aaGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCa > 1:3955758/1‑91 (MQ=255) aaGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCa < 1:2192901/91‑1 (MQ=255) aGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCat > 1:850811/1‑91 (MQ=255) aGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCat < 1:2114846/91‑1 (MQ=255) aGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCat < 1:74941/91‑1 (MQ=255) aGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCat < 1:1288165/91‑1 (MQ=255) aGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCat < 1:1355566/91‑1 (MQ=255) aGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCat > 1:3520821/1‑91 (MQ=255) gATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCata < 1:2899571/91‑1 (MQ=255) atatTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCatat < 1:187087/91‑1 (MQ=255) tCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTAttt > 1:2559898/1‑91 (MQ=255) ccAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTc > 1:2582232/1‑91 (MQ=255) ccAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTc > 1:34925/1‑91 (MQ=255) ccAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTc > 1:3550738/1‑91 (MQ=255) gagttgcttgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcac > 1:3948759‑M1/37‑91 (MQ=255) gagttgcttgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcac > 1:3948796‑M1/37‑91 (MQ=255) gagttgcttgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcac > 1:3948959‑M1/37‑91 (MQ=255) aaaaaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcac > 1:832691/1‑91 (MQ=255) aaaaaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcac > 1:18611/1‑91 (MQ=255) aaaaaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcac > 1:3410314/1‑91 (MQ=255) aaaaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTcaca < 1:639238/91‑1 (MQ=255) aaaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCacac < 1:2686233/91‑1 (MQ=255) ttgcttgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAc‑c > 1:2859014‑M1/34‑91 (MQ=255) aaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAATGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAc‑c > 1:3594795/1‑91 (MQ=255) aaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAc‑c < 1:2002188/91‑1 (MQ=255) aaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAc‑c < 1:2229456/91‑1 (MQ=255) aaCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAc‑c < 1:323871/91‑1 (MQ=255) aCATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ct < 1:908585/91‑1 (MQ=255) cttgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑cttt > 1:112937‑M1/31‑91 (MQ=255) ttGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttc > 1:2340149/1‑91 (MQ=255) tgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttct > 1:2483819‑M1/29‑91 (MQ=255) tgctgaacattggtttggcacacgctttCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttct > 1:495755‑M1/29‑91 (MQ=255) tGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttct < 1:2635039/91‑1 (MQ=255) tGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttct > 1:1748427/1‑91 (MQ=255) gTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttctt > 1:3924983/1‑91 (MQ=255) ttAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTTACAC‑ctttcttt > 1:3060140/1‑91 (MQ=255) ttAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACGctttcaa < 1:2777907/91‑3 (MQ=255) ttAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACACGctttcaa < 1:2359392/91‑3 (MQ=255) ttAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑ctttcttt > 1:1067596/1‑91 (MQ=255) tAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCtttt > 1:3982212/1‑91 (MQ=255) cAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGaa < 1:4058653/91‑1 (MQ=255) tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCg > 1:4060298/1‑91 (MQ=255) tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCg < 1:1813067/91‑1 (MQ=255) tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCg < 1:2728609/91‑1 (MQ=255) tAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCg < 1:319251/91‑1 (MQ=255) aaaaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCgt > 1:2899328/1‑91 (MQ=255) aaaaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATAATATTTCACAC‑CTTTCTTTTGAAAGCgt < 1:1831343/91‑1 (MQ=255) aaaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCgtg > 1:1629614/1‑91 (MQ=255) aaaGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCgtgt > 1:3490266/1‑91 (MQ=255) aGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGc < 1:3962687/91‑1 (MQ=255) gAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGcc > 1:51612/1‑91 (MQ=255) aaaCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCaaa > 1:2853967/1‑91 (MQ=255) aaCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCAAAc > 1:1563061/1‑91 (MQ=255) aCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTTACAC‑CTTTCTTTTGAAAGCGTGTGCCAAAcc < 1:2442074/91‑1 (MQ=255) aCAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCAAAcc > 1:2346613/1‑91 (MQ=255) cAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCAAACCa > 1:1912143/1‑91 (MQ=255) aaTGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCAAACCaa > 1:209971/1‑91 (MQ=255) | TTGAATCGTTTTACTAGACTTTTGACCAAGATTACCAGTGTTAAAGATATTTCCAAAAACATTGTTAACAGATAAAAAGAAAAACAATGCCAAAAGAAAGGCAATAAATCTCAAGCCCCATTTACTTTCTAGCATATTATTTCACAC‑CTTTCTTTTGAAAGCGTGTGCCAAACCAAT > USA300TCH1516_ALE/2288544‑2288720 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |