| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2306983 = | 83 (0.840) | 4 (0.050) | 4/144 | NT | 5.4% | coding (654/1371 nt) | USA300HOU_RS11770 | hypothetical protein |
| ? | USA300TCH1516_ALE | 2307053 = | 65 (0.730) | coding (584/1371 nt) | USA300HOU_RS11770 | hypothetical protein | |||||
ATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2307080‑2306983‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGACCC > USA300TCH1516_ALE/2307053‑2307142 ATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGC < 1:3035025/91‑1 TAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCA > 1:3441032/1‑91 TAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCA > 1:1958781/1‑91 TAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCA > 1:3115967/1‑91 TTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAG < 1:1360240/91‑1 TTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAG < 1:1360737/91‑1 TTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAG < 1:1287175/91‑1 AGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTT < 1:3064045/91‑1 AGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTT < 1:2950793/91‑1 TGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTCCGTCTCCAATAAATGATGCTAAA > 1:1675569/1‑91 TTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTCCGTCTCCAATAAATGATGCTAAATT > 1:2961554/1‑91 TGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTCCGTCTCCAATAAATGATGCTAAATTA > 1:630090/1‑91 GGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTTCCGTCTCCAATAAATGATGCTAAATTAT > 1:601899/1‑91 CAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAT < 1:2888748/91‑1 CAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAT < 1:2888736/91‑1 CAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAT > 1:1803338/1‑91 CAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAT < 1:1745437/91‑1 ACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAG > 1:1682193/1‑91 CAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGG < 1:2511539/91‑1 CAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGG > 1:525261/1‑91 AGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGA > 1:769546/1‑91 TCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGACCC < 1:2159297/91‑1 TCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGACCC < 1:3234877/91‑1 ATAATTTAGCATCATTTATTGGAGACGGAACTGTTGGTGTCTTAATTACAAGTAGACAATATGGTGAAGGATATTATTCTCGTCGTGAGGCAACAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2307080‑2306983‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caacagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGACCC > USA300TCH1516_ALE/2307053‑2307142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |