BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2306983 =	83 (0.840)	4 (0.050)	4/144	NT	5.4%	coding (654/1371 nt)	USA300HOU_RS11770	hypothetical protein
*	?	USA300TCH1516_ALE	2307053 =	65 (0.730)	4 (0.050)	4/144	NT	5.4%	coding (584/1371 nt)	USA300HOU_RS11770	hypothetical protein

Only 100 of 104 total aligned reads displayed.

ATAGAAAGCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCT  >  USA300TCH1516_ALE/2306893‑2307073

gggtcctatttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacgga                                                                                            <  1:3234877‑M1/1‑1 (MQ=255)

gggtcctatttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacgga                                                                                            <  1:2159297‑M1/1‑1 (MQ=255)

   tcctatttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACt                                                                                         >  1:769546‑M1/88‑91 (MQ=255)

   gAAAGCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACt                                                                                         >  1:327080/1‑91 (MQ=255)

    cctatttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTg                                                                                        <  1:2511539‑M1/5‑1 (MQ=255)

    cctatttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTg                                                                                        >  1:525261‑M1/87‑91 (MQ=255)

     ctatttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTGt                                                                                       >  1:1682193‑M1/86‑91 (MQ=255)

     aaGCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGt                                                                                       >  1:2885034/1‑91 (MQ=255)

       gCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTg                                                                                     >  1:3334765/1‑91 (MQ=255)

       gCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTg                                                                                     >  1:1580583/1‑91 (MQ=255)

       gCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAAATACACTAAATGTCGTTGAAATAACTGTTg                                                                                     >  1:3335671/1‑91 (MQ=255)

       atttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTGTTg                                                                                     <  1:2888748‑M1/8‑1 (MQ=255)

       atttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTGTTg                                                                                     <  1:2888736‑M1/8‑1 (MQ=255)

       atttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTGTTg                                                                                     >  1:1803338‑M1/84‑91 (MQ=255)

       atttttagaccggttatgagacctttatttacattgccaggacgttcgacggtagataatttagcatcatttattggagacggAACTGTTg                                                                                     <  1:1745437‑M1/8‑1 (MQ=255)

         aaaaaaTTGATTTTGCATGTGCACTGTTTCAGCGACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGcc                                                                                   <  1:782638/91‑1 (MQ=255)

         aaaaaaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGcc                                                                                   <  1:1745738/91‑1 (MQ=255)

          aaaaaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCt                                                                                  >  1:780527/1‑91 (MQ=255)

           aaaaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTc                                                                                 >  1:2490333/1‑91 (MQ=255)

            aaaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCa                                                                                >  1:2936467/1‑91 (MQ=255)

             aaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTATACTAAATGTCGTTGAAATAACTGTTGCCTCac                                                                               >  1:2872370/1‑91 (MQ=255)

             aaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCac                                                                               <  1:667090/91‑1 (MQ=255)

             aaTTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCac                                                                               >  1:639614/1‑91 (MQ=255)

               ttGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACGAAATGTCGTTGAAATAACTGTTGCCTCacga                                                                             <  1:3433926/91‑1 (MQ=255)

               aattttttGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCacga                                                                             >  1:1674114/5‑91 (MQ=255)

                tGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCacgac                                                                            <  1:2796529/91‑1 (MQ=255)

                 gATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCacgacg                                                                           <  1:4133671/91‑1 (MQ=255)

                  aTTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCAcgacga                                                                          <  1:739717/91‑1 (MQ=255)

                     ttGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaa                                                                       >  1:4033801/1‑91 (MQ=255)

                      tGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaat                                                                      <  1:33228/91‑1 (MQ=255)

                      tGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaat                                                                      >  1:2609826/1‑91 (MQ=255)

                      tGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaat                                                                      <  1:2423028/91‑1 (MQ=255)

                         aTGTGCACTGTTTGAGCAACTACAATTGCAAAGGTGATAGAAAGTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaattct                                                                   <  1:4149795/91‑4 (MQ=255)

                         aTGTGCACTGTTTCAGCAACTACAATTGCGAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaataat                                                                   <  1:1267693/91‑1 (MQ=255)

                         aTGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaataat                                                                   <  1:3672720/91‑1 (MQ=255)

                         aTGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGaataat                                                                   <  1:1115948/91‑1 (MQ=255)

                           gtgCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAatat                                                                 >  1:97005/1‑91 (MQ=255)

                           gtgCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAatat                                                                 >  1:3318494/1‑91 (MQ=255)

                            tgCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATc                                                                <  1:3533863/91‑1 (MQ=255)

                             gCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATcc                                                               <  1:2195512/91‑1 (MQ=255)

                             gCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATcc                                                               <  1:3652035/91‑1 (MQ=255)

                              cACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCt                                                              >  1:1092661/1‑91 (MQ=255)

                              cACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCt                                                              >  1:1092550/1‑91 (MQ=255)

                               aCTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCtt                                                             <  1:1323635/91‑1 (MQ=255)

                               aCTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCtt                                                             <  1:655310/91‑1 (MQ=255)

                                cTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTc                                                            >  1:282159/1‑91 (MQ=255)

                                cTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTc                                                            >  1:1676669/1‑91 (MQ=255)

                                 tGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCa                                                           >  1:3349305/1‑91 (MQ=255)

                                  gTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCAc                                                          <  1:3619101/91‑1 (MQ=255)

                                     tCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCat                                                       >  1:3159665/1‑91 (MQ=255)

                                     tCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCat                                                       <  1:2509509/91‑1 (MQ=255)

                                      cAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCata                                                      <  1:1559989/91‑1 (MQ=255)

                                       aGCAACTACAATTGCAAAGGTGATAGAAACTACGCTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCatat                                                     <  1:3683574/91‑1 (MQ=255)

                                        gCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATAtt                                                    >  1:4094399/1‑91 (MQ=255)

                                        gCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATAtt                                                    >  1:4094485/1‑91 (MQ=255)

                                         cAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTg                                                   <  1:179092/91‑1 (MQ=255)

                                           aCTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTc                                                 <  1:562038/91‑1 (MQ=255)

                                            cTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCt                                                >  1:772305/1‑91 (MQ=255)

                                            cTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCt                                                >  1:2879093/1‑91 (MQ=255)

                                            cTACAATTGCAAAGGTGATAGAAACCACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCt                                                <  1:3845533/91‑1 (MQ=255)

                                               cAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACt                                             <  1:912511/91‑1 (MQ=255)

                                                 aTTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTg                                           <  1:339710/91‑1 (MQ=255)

                                                 aTTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTg                                           <  1:3416383/91‑1 (MQ=255)

                                                  ttGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGt                                          <  1:3493077/91‑1 (MQ=255)

                                                   tGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTa                                         <  1:2169400/91‑1 (MQ=255)

                                                   tGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTa                                         <  1:2169440/91‑1 (MQ=255)

                                                    gCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTaa                                        >  1:1408214/1‑91 (MQ=255)

                                                       aaGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTa                                     <  1:3850124/91‑1 (MQ=255)

                                                        aGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTaa                                    <  1:1865593/91‑1 (MQ=255)

                                                        aGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTaa                                    <  1:1902046/91‑1 (MQ=255)

                                                         ggTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAg                                   >  1:2302987/1‑91 (MQ=255)

                                                         ggTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACAAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAg                                   >  1:1977249/1‑91 (MQ=255)

                                                              tAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACAcc                              >  1:2518158/1‑91 (MQ=255)

                                                              ataatttagcatcatttattggagacggAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACAcc                              >  1:601899‑M1/29‑91 (MQ=255)

                                                               taatttagcatcatttattggagacggAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCa                             >  1:630090‑M1/28‑91 (MQ=255)

                                                                gAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCaa                            <  1:1246639/91‑1 (MQ=255)

                                                                aatttagcatcatttattggagacggAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCaa                            >  1:2961554‑M1/27‑91 (MQ=255)

                                                                  tttagcatcatttattggagacggAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACa                          >  1:1675569‑M1/25‑91 (MQ=255)

                                                                  aaCTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCTTTCACCATATTGTCTACTTGTAATTAAGACACCAACa                          <  1:3506763/91‑1 (MQ=255)

                                                                  aaCTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACa                          <  1:89163/91‑1 (MQ=255)

                                                                  aaCTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACa                          <  1:887039/91‑1 (MQ=255)

                                                                  aaCTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACa                          >  1:3244209/1‑91 (MQ=255)

                                                                   aCTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAg                         <  1:3090662/91‑1 (MQ=255)

                                                                   aCTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAg                         <  1:3635143/91‑1 (MQ=255)

                                                                   aCTACACTAAATGTCGTTGAAATAACTGTTGCCGCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAg                         <  1:1579669/91‑1 (MQ=255)

                                                                    cTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGt                        <  1:1953093/91‑1 (MQ=255)

                                                                      acacTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTc                      >  1:3899480/1‑91 (MQ=255)

                                                                      acacTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTc                      >  1:4124179/1‑91 (MQ=255)

                                                                              tGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCa              >  1:829341/1‑91 (MQ=255)

                                                                              tGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCa              >  1:829385/1‑91 (MQ=255)

                                                                                  gTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATaa          >  1:2051774/1‑91 (MQ=255)

                                                                                  gTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGCAATTAAGACACCAACAGTTCCGTCTCCAATaa          >  1:3532884/1‑91 (MQ=255)

                                                                                   ttGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATaaa         >  1:3308874/1‑91 (MQ=255)

                                                                                    tGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAat        <  1:4126151/91‑1 (MQ=255)

                                                                                      aaaTAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAatga      <  1:2221623/91‑1 (MQ=255)

                                                                                       aaTAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAatgat     >  1:1262102/1‑91 (MQ=255)

                                                                                       aaTAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAatgat     >  1:1607926/1‑91 (MQ=255)

                                                                                         tAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGc   >  1:1356303/1‑91 (MQ=255)

                                                                                          AACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCt  <  1:3064045‑M1/91‑1 (MQ=255)

                                                                                          AACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCt  <  1:2950793‑M1/91‑1 (MQ=255)

ATAGAAAGCAAAAAATTGATTTTGCATGTGCACTGTTTCAGCAACTACAATTGCAAAGGTGATAGAAACTACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCT  >  USA300TCH1516_ALE/2306893‑2307073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.