New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2306983 =	83 (0.840)	4 (0.050)	4/144	NT	5.4%	coding (654/1371 nt)	USA300HOU_RS11770	hypothetical protein
	?	USA300TCH1516_ALE	2307053 =	65 (0.730)					coding (584/1371 nt)	USA300HOU_RS11770	hypothetical protein

ACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGACCC  >  USA300TCH1516_ALE/2306963‑2307142                                                                                           |                                                                                          acacTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTc                                                                                           >  1:3899480/1‑91 (MQ=255) acacTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTc                                                                                           >  1:4124179/1‑91 (MQ=255)         tGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCa                                                                                   >  1:829385/1‑91 (MQ=255)         tGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCa                                                                                   >  1:829341/1‑91 (MQ=255)             gTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATaa                                                                               >  1:2051774/1‑91 (MQ=255)             gTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGCAATTAAGACACCAACAGTTCCGTCTCCAATaa                                                                               >  1:3532884/1‑91 (MQ=255)              ttGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATaaa                                                                              >  1:3308874/1‑91 (MQ=255)               tGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAat                                                                             <  1:4126151/91‑1 (MQ=255)                 aaaTAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAatga                                                                           <  1:2221623/91‑1 (MQ=255)                  aaTAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAatgat                                                                          >  1:1607926/1‑91 (MQ=255)                  aaTAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAatgat                                                                          >  1:1262102/1‑91 (MQ=255)                    tAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGc                                                                        >  1:1356303/1‑91 (MQ=255)                     AACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCt                                                                       <  1:2950793‑M1/91‑1 (MQ=255)                     AACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCt                                                                       <  1:3064045‑M1/91‑1 (MQ=255)                       CTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTaa                                                                     <  1:1287175‑M1/91‑1 (MQ=255)                       CTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTaa                                                                     <  1:1360240‑M1/91‑1 (MQ=255)                       CTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTaa                                                                     <  1:1360737‑M1/91‑1 (MQ=255)                        tgttggtgtcttaattacaagtagacaatatggtgaaggatattattctcgtcgtgaggcaacagttCCGTCTCCAATAAATGATGCTaaa                                                                    >  1:1675569‑M2/68‑91 (MQ=255)                          ttggtgtcttaattacaagtagacaatatggtgaaggatattattctcgtcgtgaggcaacagttCCGTCTCCAATAAATGATGCTAAAtt                                                                  >  1:2961554‑M2/66‑91 (MQ=255)                           tggtgtcttaattacaagtagacaatatggtgaaggatattattctcgtcgtgaggcaacagttCCGTCTCCAATAAATGATGCTAAATTa                                                                 >  1:630090‑M2/65‑91 (MQ=255)                           TGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTa                                                                 >  1:3115967‑M1/1‑91 (MQ=255)                           TGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTa                                                                 >  1:3441032‑M1/1‑91 (MQ=255)                           TGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTa                                                                 >  1:1958781‑M1/1‑91 (MQ=255)                            ggtgtcttaattacaagtagacaatatggtgaaggatattattctcgtcgtgaggcaacagttCCGTCTCCAATAAATGATGCTAAATTAt                                                                >  1:601899‑M2/64‑91 (MQ=255)                            GCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTAt                                                                <  1:3035025‑M1/91‑1 (MQ=255)                             ccTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATc                                                               >  1:909411/1‑91 (MQ=255)                                cACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAGTTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTAc                                                            >  1:3598706/1‑91 (MQ=255)                                cACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTACTTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTAc                                                            >  1:3597319/1‑91 (MQ=255)                                cACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTAc                                                            >  1:2805551/1‑91 (MQ=255)                                  cgacgaGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCg                                                          <  1:3161195/91‑1 (MQ=255)                                  cgacgaGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCg                                                          >  1:2629718/1‑91 (MQ=255)                                     cgaTAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCg                                                       <  1:3212668/91‑1 (MQ=255)                                     cgaGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCg                                                       >  1:771161/1‑91 (MQ=255)                                      gagaATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGa                                                      >  1:900485/1‑91 (MQ=255)                                      gagaATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGa                                                      >  1:1020550/1‑91 (MQ=255)                                      gagaATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGa                                                      <  1:3412616/91‑1 (MQ=255)                                      gagaATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTACAATAAATGATGCTAAATTATCTACCGTCGa                                                      <  1:434165/91‑1 (MQ=255)                                         aataatATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACg                                                   <  1:1229391/91‑1 (MQ=255)                                         aataatATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACg                                                   <  1:2287541/91‑1 (MQ=255)                                          ataataTCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGt                                                  <  1:3525055/91‑1 (MQ=255)                                           taataTCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTc                                                 <  1:1263348/91‑1 (MQ=255)                                            aataTCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTcc                                                >  1:118134/1‑91 (MQ=255)                                              tatCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTg                                              >  1:824225/1‑91 (MQ=255)                                              tatCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTg                                              >  1:4022930/1‑91 (MQ=255)                                               atCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTgg                                             >  1:1020983/1‑91 (MQ=255)                                                tCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGc                                            <  1:3351489/91‑1 (MQ=255)                                                 ccTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCa                                           <  1:1788475/91‑1 (MQ=255)                                                    tCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATg                                        <  1:310752/91‑1 (MQ=255)                                                    tCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATg                                        <  1:312090/91‑1 (MQ=255)                                                    tCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATg                                        >  1:2915227/1‑91 (MQ=255)                                                    tCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATg                                        <  1:285811/91‑1 (MQ=255)                                                      aCCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGta                                      >  1:1991369/1‑91 (MQ=255)                                                       ccATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGtaa                                     >  1:670100/1‑91 (MQ=255)                                                         atatTGTCTACTTGTAATTAAGACACCAACAGTGCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGtaaat                                   <  1:3678324/91‑1 (MQ=255)                                                          tatTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGtaaata                                  >  1:2941585/1‑91 (MQ=255)                                                            ttGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGtaaataaa                                >  1:754177/1‑91 (MQ=255)                                                            ttGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGtaaataaa                                >  1:1471903/1‑91 (MQ=255)                                                              gTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAgg                              <  1:3945032/91‑1 (MQ=255)                                                              gTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAgg                              <  1:3944865/91‑1 (MQ=255)                                                              gTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAgg                              <  1:1521553/91‑1 (MQ=255)                                                                cTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGtc                            <  1:3676587/91‑1 (MQ=255)                                                                 tACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATCAATGATGCTAAATCATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGtct                           >  1:3494742/1‑91 (MQ=255)                                                                 tACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGtct                           >  1:3494510/1‑91 (MQ=255)                                                                 tACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGtct                           >  1:3494863/1‑91 (MQ=255)                                                                 tACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGtct                           >  1:836272/1‑91 (MQ=255)                                                                   cTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCa                         >  1:3934253/1‑91 (MQ=255)                                                                    ttGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCAt                        >  1:2782757/1‑91 (MQ=255)                                                                    ttGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCAt                        >  1:3222792/1‑91 (MQ=255)                                                                    ttGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCAt                        >  1:3222783/1‑91 (MQ=255)                                                                     tGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATa                       >  1:2527468/1‑91 (MQ=255)                                                                     tGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATa                       >  1:2481963/1‑91 (MQ=255)                                                                       tAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAAc                     <  1:1723313/91‑1 (MQ=255)                                                                        aaTTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAAcc                    <  1:786534/91‑1 (MQ=255)                                                                         aTTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCg                   <  1:1513959/91‑1 (MQ=255)                                                                         aTTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCg                   <  1:4057862/91‑1 (MQ=255)                                                                          ttAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAATGGTCTCATAACCgg                  <  1:1010631/91‑1 (MQ=255)                                                                           tAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGt                 <  1:1256227/91‑1 (MQ=255)                                                                           tAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGt                 <  1:1853732/91‑1 (MQ=255)                                                                           tAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGt                 <  1:1830589/91‑1 (MQ=255)                                                                             aGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCt               <  1:3156972/91‑1 (MQ=255)                                                                              gACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTa              <  1:3241393/91‑1 (MQ=255)                                                                              gACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTa              <  1:1899975/91‑1 (MQ=255)                                                                              gACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTa              <  1:2151005/91‑1 (MQ=255)                                                                              gACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTa              >  1:2484889/1‑91 (MQ=255)                                                                               acacCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTaa             >  1:819660/1‑91 (MQ=255)                                                                                  ccAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTaaaaa          >  1:2977750/1‑91 (MQ=255)                                                                                   caacagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAt         >  1:1803338‑M2/9‑91 (MQ=255)                                                                                   caacagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAt         <  1:2888748‑M2/83‑1 (MQ=255)                                                                                   caacagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAt         <  1:2888736‑M2/83‑1 (MQ=255)                                                                                   caacagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAAt         <  1:1745437‑M2/83‑1 (MQ=255)                                                                                     acagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAg       >  1:1682193‑M2/7‑91 (MQ=255)                                                                                      cagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAgg      <  1:2511539‑M2/86‑1 (MQ=255)                                                                                      cagttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAgg      >  1:525261‑M2/6‑91 (MQ=255)                                                                                       agttCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGa     >  1:769546‑M2/5‑91 (MQ=255)                                                                                          tCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGAccc  <  1:2159297‑M2/90‑1 (MQ=255)                                                                                          tCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGAccc  <  1:3234877‑M2/90‑1 (MQ=255)                                                                                           |                                                                                          ACACTAAATGTCGTTGAAATAACTGTTGCCTCACGACGAGAATAATATCCTTCACCATATTGTCTACTTGTAATTAAGACACCAACAGTTCCGTCTCCAATAAATGATGCTAAATTATCTACCGTCGAACGTCCTGGCAATGTAAATAAAGGTCTCATAACCGGTCTAAAAATAGGACCC  >  USA300TCH1516_ALE/2306963‑2307142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.