| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2315068 = | 89 (0.910) | 7 (0.080) | 5/150 | NT | 8.4% | coding (202/1194 nt) | ndhE | NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic |
| ? | USA300TCH1516_ALE | 2315102 = | 69 (0.750) | coding (168/1194 nt) | ndhE | NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic | |||||
TCTGGGGATTGTCAATTTTTGCAGACTTGTACCAATATTATTACTAAGTGTGTGGGCAGGGGCAATTGCCGATAAATATGATAAAGGGCGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2315162‑2315068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTA > USA300TCH1516_ALE/2315102‑2315190 TCTGGGGATTGTCAATTTTTGCAGACTTTTACCAATATTATTACTAAGTGTGTGGGCAGGGGCAATTGCCGATAAATATGATAAAGGGCGA > 1:928919/1‑91TCTGGGGATTGTCAATTTTTGCAGACTTGTACCAATATTATTACTAAGTGTGTGGGCAGGGGCAATTGCCGATAAATATGATAAAGGGCGA > 1:3929685/1‑91 GGCAATTGCCGAGAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCC > 1:3183452/1‑91 ATTGCCGATAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAG > 1:10936/1‑91 CCGATAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAA > 1:2342403/1‑91 CCGATAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAA > 1:3039268/1‑91 CCGATAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAA > 1:3039365/1‑91 CGATAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAA > 1:11860/1‑91 GATAAATATGATAAAGGGCGATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAAC > 1:2357906/1‑91 ATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAA > 1:3265402/1‑91 ATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAA > 1:3266331/1‑91 GCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTA > 1:3472913/1‑91 TCTGGGGATTGTCAATTTTTGCAGACTTGTACCAATATTATTACTAAGTGTGTGGGCAGGGGCAATTGCCGATAAATATGATAAAGGGCGATTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2315162‑2315068‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTA > USA300TCH1516_ALE/2315102‑2315190 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |