New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2315068 =	89 (0.910)	7 (0.080)	5/150	NT	8.4%	coding (202/1194 nt)	ndhE	NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic
	?	USA300TCH1516_ALE	2315102 =	69 (0.750)					coding (168/1194 nt)	ndhE	NAD(P)H‑quinone oxidoreductase subunit 4L, chloroplastic

CGTGAGCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTACA  >  USA300TCH1516_ALE/2315012‑2315192                                                                                           |                                                                                           ggattgtcaatttttgcagacttgtaccaatattattactaagtgtgtgggcagggGCAATCGCCCTTTATCATATTTCTCGGCAATTGcc                                                                                            >  1:3183452‑M1/57‑91 (MQ=255) cGTGAGCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGcc                                                                                            >  1:1429771/1‑91 (MQ=255)  gTGAGTACACATAAAATTGCAGTTATTAAAAATGATGATCAAATTGTAATTCTTAGCAATCGCCCTTTATCATATTTATCGGCAATTGccc                                                                                           <  1:3861934/91‑1 (MQ=255)  gTGAGCACACATAAAATTGCAGTTACTAAAAATGATGATGAAGTTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGccc                                                                                           <  1:1431848/91‑1 (MQ=255)  gTGAGCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGccc                                                                                           <  1:1928611/91‑1 (MQ=255)   tGAGCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGcccc                                                                                          <  1:1392649/91‑1 (MQ=255)      gCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGc                                                                                       >  1:251407/1‑91 (MQ=255)      gCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGc                                                                                       >  1:1922447/1‑91 (MQ=255)       cacacaTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGcc                                                                                      >  1:690965/1‑91 (MQ=255)       cacacaTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGcc                                                                                      >  1:687896/1‑91 (MQ=255)       cacacaTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGcc                                                                                      >  1:2857645/1‑91 (MQ=255)       cacacaTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGcc                                                                                      >  1:3794137/1‑91 (MQ=255)       cacacaTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGcc                                                                                      >  1:3794105/1‑91 (MQ=255)           caTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCGCTGCCcaca                                                                                  >  1:3732792/1‑91 (MQ=255)           caTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCcaca                                                                                  >  1:415796/1‑91 (MQ=255)           caTAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCcaca                                                                                  >  1:1371192/1‑91 (MQ=255)             tAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCcacaca                                                                                >  1:808790/1‑91 (MQ=255)               aaaTTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACt                                                                              <  1:2302028/91‑1 (MQ=255)                aaTTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACtt                                                                             >  1:1769147/1‑91 (MQ=255)                 aTTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTa                                                                            >  1:2701315/1‑91 (MQ=255)                 aTTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTa                                                                            <  1:1275979/91‑1 (MQ=255)                    gCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGta                                                                         <  1:167227/91‑1 (MQ=255)                     cAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGtaa                                                                        >  1:3964278/1‑91 (MQ=255)                     cAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTCATCGGCAATTGCCCCTGCCCACACACTTAGtaa                                                                        >  1:3401416/1‑91 (MQ=255)                     cAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTCATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGtaa                                                                        >  1:3608495/1‑91 (MQ=255)                      aGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGtaat                                                                       <  1:371775/91‑1 (MQ=255)                      aGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGtaat                                                                       >  1:985507/1‑91 (MQ=255)                       gTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGtaata                                                                      >  1:761657/1‑91 (MQ=255)                        ttACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGtaataa                                                                     <  1:1816301/91‑1 (MQ=255)                         tACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTaataat                                                                    >  1:1902078/1‑91 (MQ=255)                          aCTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAataata                                                                   <  1:2463328/91‑1 (MQ=255)                              aaaaTGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTgg                                                               >  1:3702256/1‑91 (MQ=255)                              aaaaTGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTgg                                                               >  1:3702241/1‑91 (MQ=255)                               aaaTGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGt                                                              >  1:2268076/1‑91 (MQ=255)                                 atgatgatgAAATTGTAATTCTCAGCAATCGCCTTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTAc                                                            >  1:2965176/1‑91 (MQ=255)                                   gatgatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACaa                                                          >  1:3679257/1‑91 (MQ=255)                                    atgatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAg                                                         >  1:2672021/1‑91 (MQ=255)                                    atgatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAg                                                         >  1:974455/1‑91 (MQ=255)                                    atgatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCCGCCCACACACTTAGTAATAATATTGGTACAAg                                                         >  1:3541005/1‑91 (MQ=255)                                    atgatgaAATTGTAATTCTCAGCAATCGCCCCTTATCATATTTATCGGCAATTGCCCGTGCCCACACACTTAGTAATAATATTGGTACAAg                                                         >  1:3684811/1‑91 (MQ=255)                                      gatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTc                                                       >  1:2996696/1‑91 (MQ=255)                                      gatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTc                                                       <  1:3323695/91‑1 (MQ=255)                                      gatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTc                                                       <  1:989768/91‑1 (MQ=255)                                      gatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTc                                                       >  1:2878853/1‑91 (MQ=255)                                      gatgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTc                                                       >  1:739032/1‑91 (MQ=255)                                       atgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCt                                                      >  1:2328097/1‑91 (MQ=255)                                       atgaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCt                                                      >  1:2526066/1‑91 (MQ=255)                                         gaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGc                                                    <  1:2771369/91‑1 (MQ=255)                                         gaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGc                                                    <  1:2765421/91‑1 (MQ=255)                                         gaAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGc                                                    <  1:2423098/91‑1 (MQ=255)                                          aaaTTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCa                                                   <  1:3186192/91‑1 (MQ=255)                                                tAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAAtt                                             <  1:144131/91‑1 (MQ=255)                                                 aaTTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTg                                            >  1:3337328/1‑91 (MQ=255)                                                  aTTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGa                                           <  1:23438/91‑1 (MQ=255)                                                   ttCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGAc                                          >  1:1364900/1‑91 (MQ=255)                                                      tcAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAAt                                       >  1:1803872/1‑91 (MQ=255)                                                        ggcaattgccgagaaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATcc                                     >  1:3183452‑M2/36‑91 (MQ=255)                                                        aGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATcc                                     <  1:2935718/91‑1 (MQ=255)                                                            attgccgataaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAg                                 >  1:10936‑M2/32‑91 (MQ=255)                                                             TCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGa                                >  1:3929685‑M1/1‑91 (MQ=255)                                                             TCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTAAAAGTCTGCAAAAATTGACAATCCCCAGa                                >  1:928919‑M1/1‑91 (MQ=255)                                                              cGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGAt                               >  1:3280253/1‑91 (MQ=255)                                                               gCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATa                              >  1:1590/1‑91 (MQ=255)                                                               gCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATa                              >  1:2784930/1‑91 (MQ=255)                                                                ccgataaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATaa                             >  1:3039365‑M2/28‑91 (MQ=255)                                                                ccgataaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATaa                             >  1:3039268‑M2/28‑91 (MQ=255)                                                                ccgataaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATaa                             >  1:2342403‑M2/28‑91 (MQ=255)                                                                cccTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATaa                             <  1:498657/91‑1 (MQ=255)                                                                 cgataaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATaaa                            >  1:11860‑M2/27‑91 (MQ=255)                                                                  gataaatatgataaagggcgattgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAAc                           >  1:2357906‑M2/26‑91 (MQ=255)                                                                  cTTTATCATATTTATCGGCAATTGCCCCTGCCCACGCACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAAc                           <  1:4016412/91‑1 (MQ=255)                                                                      aTCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCg                       >  1:3574975/1‑91 (MQ=255)                                                                       tCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGt                      >  1:241583/1‑91 (MQ=255)                                                                       tCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGt                      >  1:2733255/1‑91 (MQ=255)                                                                         atatTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTa                    <  1:1601957/91‑1 (MQ=255)                                                                          tatTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTAt                   <  1:511102/91‑1 (MQ=255)                                                                           atTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATg                  <  1:1676696/91‑1 (MQ=255)                                                                           atTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATg                  <  1:2562807/91‑1 (MQ=255)                                                                           atTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATg                  <  1:2557428/91‑1 (MQ=255)                                                                           atTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATg                  <  1:1676841/91‑1 (MQ=255)                                                                             ttATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGAt                <  1:949289/91‑1 (MQ=255)                                                                              tATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATa               <  1:1810421/91‑1 (MQ=255)                                                                                tCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAg             >  1:517500/1‑91 (MQ=255)                                                                                tCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAg             <  1:897238/91‑1 (MQ=255)                                                                                 cGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGt            >  1:3035064/1‑91 (MQ=255)                                                                                  ggCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTg           >  1:2997384/1‑91 (MQ=255)                                                                                  ggCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTg           >  1:43618/1‑91 (MQ=255)                                                                                  ggCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTg           >  1:3329688/1‑91 (MQ=255)                                                                                  ggCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTg           >  1:3370137/1‑91 (MQ=255)                                                                                      attgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTaa       >  1:3265402‑M2/6‑91 (MQ=255)                                                                                      attgcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTaa       >  1:3266331‑M2/6‑91 (MQ=255)                                                                                         gcCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTa    >  1:3472913‑M2/3‑91 (MQ=255)                                                                                           cccTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTACa  >  1:1952199/1‑91 (MQ=255)                                                                                           cccTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTACa  >  1:3573951/1‑91 (MQ=255)                                                                                           |                                                                                           CGTGAGCACACATAAAATTGCAGTTACTAAAAATGATGATGAAATTGTAATTCTCAGCAATCGCCCTTTATCATATTTATCGGCAATTGCCCCTGCCCACACACTTAGTAATAATATTGGTACAAGTCTGCAAAAATTGACAATCCCCAGATAAACTGCGTTATGATAAGTGGTAAGTACA  >  USA300TCH1516_ALE/2315012‑2315192

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.