| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2331225 | 76 (0.770) | 7 (0.080) | 4/148 | NT | 8.1% | coding (694/933 nt) | lacC_2 | Tagatose‑6‑phosphate kinase |
| ? | USA300TCH1516_ALE | = 2331255 | 88 (0.970) | coding (664/933 nt) | lacC_2 | Tagatose‑6‑phosphate kinase | |||||
GCTGAAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2331131‑2331225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtgTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGGTTGGT < USA300TCH1516_ALE/2331255‑2331166 GCTGAAGTAATTCCAGCACCTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGAT < 1:3743600/91‑1 CTGAAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATT < 1:287476/91‑1 TGAAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTG > 1:508747/1‑91 GAAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGT > 1:2661201/1‑91 AAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTG < 1:1545780/91‑1 ACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGC < 1:1542548/91‑1 CAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCAC < 1:2834370/91‑1 CAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCAC < 1:2834458/91‑1 ACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAA < 1:2119464/91‑1 ACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAA < 1:2119753/91‑1 ATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATA < 1:1108984/91‑1 ATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATA < 1:1109175/91‑1 ATTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGG < 1:1563276/91‑1 TTGTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGGT < 1:3055957/91‑1 GTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGGTTG > 1:3670513/1‑91 GTGTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGGTTG > 1:1215639/1‑91 GTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGGTTGGT > 1:504523/1‑91 GCTGAAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2331131‑2331225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtgTCTTTAGGTGCACAAGGTGCATTCGCTAAGCACAATCATACATTCTATAGAGTGAATATTCCGACAATAAGTGTATTAAATCCGGTTGGT < USA300TCH1516_ALE/2331255‑2331166 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |