BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2331225	76 (0.770)	7 (0.080)	4/148	NT	8.1%	coding (694/933 nt)	lacC_2	Tagatose‑6‑phosphate kinase
*	?	USA300TCH1516_ALE	= 2331255	88 (0.970)	7 (0.080)	4/148	NT	8.1%	coding (664/933 nt)	lacC_2	Tagatose‑6‑phosphate kinase

Only 100 of 108 total aligned reads displayed.

ACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAGCAA  >  USA300TCH1516_ALE/2331166‑2331345

accaaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAc                                                                                           >  1:504523‑M2/1‑90 (MQ=255)

  caaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcac                                                                                         >  1:3670513‑M2/1‑88 (MQ=255)

  caaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcac                                                                                         >  1:1215639‑M2/1‑88 (MQ=255)

    accGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaa                                                                                       <  1:3055957‑M2/91‑6 (MQ=255)

     ccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaat                                                                                      <  1:1563276‑M2/91‑7 (MQ=255)

      cGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACaata                                                                                     >  1:542797/1‑91 (MQ=255)

       ggATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACaataa                                                                                    >  1:2370386/1‑91 (MQ=255)

         aTTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATc                                                                                  >  1:3883109/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:124945/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:1277410/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:3761758/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:4087674/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:4087735/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:1738685/1‑91 (MQ=255)

            tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATACACCTTGTGCACCTAAAGACACAATAATCCAc                                                                               >  1:2706024/1‑91 (MQ=255)

             aaTACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACt                                                                              >  1:307165/1‑91 (MQ=255)

                 cacTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAAt                                                                          <  1:677242/91‑1 (MQ=255)

                  acTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATc                                                                         <  1:139431/91‑1 (MQ=255)

                    ttATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATccc                                                                       <  1:2998082/91‑1 (MQ=255)

                    ttATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATccc                                                                       <  1:323916/91‑1 (MQ=255)

                       ttGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTc                                                                    >  1:310779/1‑91 (MQ=255)

                       ttGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTc                                                                    >  1:1415200/1‑91 (MQ=255)

                         gTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGa                                                                  <  1:74816/91‑1 (MQ=255)

                          tCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGaa                                                                 <  1:3557189/91‑1 (MQ=255)

                           cGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAAt                                                                >  1:2150138/1‑91 (MQ=255)

                           cGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAAt                                                                <  1:2975756/91‑1 (MQ=255)

                           cGGAATATTCACTCTATAGAATGTATGATTGTGCTTACCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAAt                                                                >  1:3496233/1‑91 (MQ=255)

                             gAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATaa                                                              >  1:581258/1‑91 (MQ=255)

                             gAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATaa                                                              >  1:581257/1‑91 (MQ=255)

                                   tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                                                        <  1:2184966/91‑1 (MQ=255)

                                   tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                                                        <  1:1748158/91‑1 (MQ=255)

                                   tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                                                        >  1:1685116/1‑91 (MQ=255)

                                    cACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtgt                                                       >  1:235316/1‑91 (MQ=255)

                                         tataGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGacac                                                  <  1:3013830/91‑1 (MQ=255)

                                            aGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGc                                               >  1:4137308/1‑91 (MQ=255)

                                             gAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGcc                                              <  1:800189/91‑1 (MQ=255)

                                             gAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGcc                                              >  1:2456114/1‑91 (MQ=255)

                                                 gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt                                          <  1:3201140/91‑1 (MQ=255)

                                                 gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt                                          <  1:4077404/91‑1 (MQ=255)

                                                 gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt                                          <  1:3231858/91‑1 (MQ=255)

                                                 gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt                                          >  1:1733470/1‑91 (MQ=255)

                                                 gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt                                          >  1:3235868/1‑91 (MQ=255)

                                                 gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt                                          <  1:2221869/91‑1 (MQ=255)

                                                  tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaat                                         <  1:1108984‑M2/91‑52 (MQ=255)

                                                  tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaat                                         <  1:1109175‑M2/91‑52 (MQ=255)

                                                  tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGttt                                         >  1:3967887/1‑91 (MQ=255)

                                                  tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGttt                                         <  1:219918/91‑1 (MQ=255)

                                                   aTGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTc                                        <  1:1732687/91‑1 (MQ=255)

                                                   aTGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTc                                        >  1:4037240/1‑91 (MQ=255)

                                                   aTGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTc                                        <  1:2878789/91‑1 (MQ=255)

                                                    tGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCa                                       >  1:2138773/1‑91 (MQ=255)

                                                      aTTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCaaa                                     >  1:3266452/1‑91 (MQ=255)

                                                       ttGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggt                                    <  1:2119464‑M2/91‑57 (MQ=255)

                                                         gtgCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttg                                  <  1:2834458‑M2/91‑59 (MQ=255)

                                                         gtgCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttg                                  <  1:2834370‑M2/91‑59 (MQ=255)

                                                         gtgCTTAGCGAATGCACCTTGTGCACCTAAAGAGACAATAATCCACTCAATCCCTTCGACTAAGGGTTGTGACACTGCCTGTTTCAAACtt                                  <  1:3683011/91‑1 (MQ=255)

                                                           gCTTAGCGAATGCACCTTGTGCACCTAAAGGCACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTc                                <  1:1471019/91‑1 (MQ=255)

                                                           gCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTc                                <  1:1824469/91‑1 (MQ=255)

                                                            cTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCt                               <  1:1214931/91‑1 (MQ=255)

                                                             ttAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTa                              <  1:3722956/91‑1 (MQ=255)

                                                             ttAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTa                              <  1:3229300/91‑1 (MQ=255)

                                                             ttAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCCAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTa                              <  1:3496548/91‑1 (MQ=255)

                                                               aGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTaaa                            >  1:2224964/1‑91 (MQ=255)

                                                               aGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTaaa                            >  1:2994136/1‑91 (MQ=255)

                                                                 cGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACt                          <  1:3714576/91‑1 (MQ=255)

                                                                 cGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACt                          >  1:2966404/1‑91 (MQ=255)

                                                                  gAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACtt                         <  1:2458137/91‑1 (MQ=255)

                                                                      gCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTtcat                     >  1:2977160/1‑91 (MQ=255)

                                                                        aCCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTtcatca                   <  1:546210/91‑1 (MQ=255)

                                                                        aCCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTtcatca                   <  1:546131/91‑1 (MQ=255)

                                                                         ccTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCaa                  >  1:809930/1‑91 (MQ=255)

                                                                         ccTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCaa                  >  1:2383048/1‑91 (MQ=255)

                                                                         ccTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCaa                  <  1:3856308/91‑1 (MQ=255)

                                                                         ccTTGTGCACCTAAAGACACAATAATCCACTCAATCACTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCaa                  >  1:776381/1‑91 (MQ=255)

                                                                         caaggtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCaa                  >  1:1089369/5‑91 (MQ=255)

                                                                          cTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAg                 >  1:3523813/1‑91 (MQ=255)

                                                                          cTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAg                 <  1:2936735/91‑1 (MQ=255)

                                                                           ttGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGCCACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGt                >  1:3933451/1‑91 (MQ=255)

                                                                            tgtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTg               <  1:2555635/91‑1 (MQ=255)

                                                                            tgtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTg               >  1:2640910/1‑91 (MQ=255)

                                                                             gtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTgg              <  1:1164211/91‑1 (MQ=255)

                                                                             gtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTgg              >  1:1378551/1‑91 (MQ=255)

                                                                             gtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTgg              >  1:814038/1‑91 (MQ=255)

                                                                             gtgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTgg              <  1:1164339/91‑1 (MQ=255)

                                                                              tgCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGc             >  1:701703/1‑91 (MQ=255)

                                                                                cACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTg           >  1:3441523/1‑91 (MQ=255)

                                                                                 aCCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTgg          <  1:383470/91‑1 (MQ=255)

                                                                                 aCCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTgg          >  1:313070/1‑91 (MQ=255)

                                                                                  ccTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCGTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGt         <  1:3507932/91‑1 (MQ=255)

                                                                                  ccTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGt         <  1:1848830/91‑1 (MQ=255)

                                                                                  ccTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGt         >  1:1610321/1‑91 (MQ=255)

                                                                                   cTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGtt        >  1:1772229/1‑91 (MQ=255)

                                                                                   cTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGtt        <  1:305064/91‑1 (MQ=255)

                                                                                   cTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGtt        <  1:305317/91‑1 (MQ=255)

                                                                                   cTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGtt        >  1:2356966/1‑91 (MQ=255)

                                                                                      aaGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAg     <  1:3911922/91‑1 (MQ=255)

                                                                                      aaGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAg     <  1:957609/91‑1 (MQ=255)

                                                                                         acacAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAGCaa  <  1:1828285/91‑1 (MQ=255)

                                                                                         acacAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAGCaa  >  1:2428936/1‑91 (MQ=255)

                                                                                         acacAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAGCaa  >  1:3523990/1‑91 (MQ=255)

ACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTCTAAACTTTCATCAAGTGGCTGGTTAAGCAA  >  USA300TCH1516_ALE/2331166‑2331345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.