BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2331225	76 (0.770)	7 (0.080)	4/148	NT	8.1%	coding (694/933 nt)	lacC_2	Tagatose‑6‑phosphate kinase
*	?	USA300TCH1516_ALE	= 2331255	88 (0.970)	7 (0.080)	4/148	NT	8.1%	coding (664/933 nt)	lacC_2	Tagatose‑6‑phosphate kinase

Only 100 of 105 total aligned reads displayed.

AAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTC  >  USA300TCH1516_ALE/2331135‑2331315

aaGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTG                                                                                            <  1:1545780‑M1/91‑1 (MQ=255)

  gTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCt                                                                                          <  1:1344165/91‑1 (MQ=255)

          aGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAAt                                                                                  <  1:203500/91‑1 (MQ=255)

          aGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAAt                                                                                  <  1:203414/91‑1 (MQ=255)

           gCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATg                                                                                 <  1:623163/91‑1 (MQ=255)

           gCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATg                                                                                 <  1:623206/91‑1 (MQ=255)

            cAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGc                                                                                <  1:4082740/91‑1 (MQ=255)

              aCTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCAc                                                                              >  1:4022653/1‑91 (MQ=255)

               cTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCAcc                                                                             <  1:251596/91‑1 (MQ=255)

                tGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCt                                                                            <  1:2688871/91‑1 (MQ=255)

                tGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCt                                                                            >  1:2149109/1‑91 (MQ=255)

                tGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCt                                                                            <  1:3624732/91‑1 (MQ=255)

                tGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCt                                                                            <  1:955124/91‑1 (MQ=255)

                 gTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCAcaag                                                                           <  1:373092/91‑4 (MQ=255)

                 gTAGAATCACCAGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCAcaag                                                                           <  1:3753075/91‑4 (MQ=255)

                  tAGAATCACCTGAACAAACCGGATTTAATACACTTCTTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTtg                                                                          >  1:1842007/1‑91 (MQ=255)

                    gAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTtgtg                                                                        <  1:1769934/91‑1 (MQ=255)

                    gAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTtgtg                                                                        >  1:3248386/1‑91 (MQ=255)

                    gAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTtgtg                                                                        <  1:56003/91‑1 (MQ=255)

                     aaTCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGc                                                                       <  1:1225544/91‑1 (MQ=255)

                     aaTCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGc                                                                       <  1:1224964/91‑1 (MQ=255)

                       tCACCTGAACCAACCGGATTTAATACACTTATTGTCAGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCAc                                                                     <  1:2890993/91‑1 (MQ=255)

                           cTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCCCCTaa                                                                 >  1:3632761/1‑91 (MQ=255)

                           cTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTaa                                                                 >  1:3133757/1‑91 (MQ=255)

                             gAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAg                                                               <  1:1580726/91‑1 (MQ=255)

                               accaaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagc                                                             <  1:1542548‑M1/91‑32 (MQ=255)

                               accaaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAc                                                             >  1:504523‑M2/1‑90 (MQ=255)

                                 caaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagcac                                                           <  1:2834370‑M1/91‑34 (MQ=255)

                                 caaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagcac                                                           <  1:2834458‑M1/91‑34 (MQ=255)

                                 caaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcac                                                           >  1:3670513‑M2/1‑88 (MQ=255)

                                 caaccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcac                                                           >  1:1215639‑M2/1‑88 (MQ=255)

                                   accGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagcacaa                                                         <  1:2119464‑M1/91‑36 (MQ=255)

                                   accGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagcacaa                                                         <  1:2119753‑M1/91‑36 (MQ=255)

                                   accGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaa                                                         <  1:3055957‑M2/91‑6 (MQ=255)

                                    ccGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaat                                                        <  1:1563276‑M2/91‑7 (MQ=255)

                                     cGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACaata                                                       >  1:542797/1‑91 (MQ=255)

                                      ggATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACaataa                                                      >  1:2370386/1‑91 (MQ=255)

                                        aTTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagcacaatcata                                                    <  1:1109175‑M1/91‑41 (MQ=255)

                                        aTTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGtctttaggtgcacaaggtgcattcgctaagcacaatcata                                                    <  1:1108984‑M1/91‑41 (MQ=255)

                                        aTTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATc                                                    >  1:3883109/1‑91 (MQ=255)

                                          ttAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCa                                                  >  1:3010265/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:4087674/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:1277410/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:1738685/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:124945/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:4087735/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:3761758/1‑91 (MQ=255)

                                           tAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATACACCTTGTGCACCTAAAGACACAATAATCCAc                                                 >  1:2706024/1‑91 (MQ=255)

                                            aaTACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACt                                                >  1:307165/1‑91 (MQ=255)

                                                cacTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAAt                                            <  1:677242/91‑1 (MQ=255)

                                                 acTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATc                                           <  1:139431/91‑1 (MQ=255)

                                                   ttATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATccc                                         <  1:2998082/91‑1 (MQ=255)

                                                   ttATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATccc                                         <  1:323916/91‑1 (MQ=255)

                                                      ttGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTc                                      >  1:1415200/1‑91 (MQ=255)

                                                        gTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGa                                    <  1:74816/91‑1 (MQ=255)

                                                         tCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGaa                                   <  1:3557189/91‑1 (MQ=255)

                                                          cGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAAt                                  <  1:2975756/91‑1 (MQ=255)

                                                          cGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAAt                                  >  1:2150138/1‑91 (MQ=255)

                                                          cGGAATATTCACTCTATAGAATGTATGATTGTGCTTACCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAAt                                  >  1:3496233/1‑91 (MQ=255)

                                                            gAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATaa                                >  1:581258/1‑91 (MQ=255)

                                                            gAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATaa                                >  1:581257/1‑91 (MQ=255)

                                                                  tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                          <  1:1748158/91‑1 (MQ=255)

                                                                  tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                          <  1:3783826/91‑1 (MQ=255)

                                                                  tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                          <  1:2184966/91‑1 (MQ=255)

                                                                  tCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtg                          >  1:1685116/1‑91 (MQ=255)

                                                                   cACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtgt                         >  1:235316/1‑91 (MQ=255)

                                                                   cACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTtgt                         >  1:543864/1‑91 (MQ=255)

                                                                      tctATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGac                      >  1:252252/1‑91 (MQ=255)

                                                                        tataGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGacac                    <  1:3013830/91‑1 (MQ=255)

                                                                           aGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGc                 >  1:4137308/1‑91 (MQ=255)

                                                                            gAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGcc                <  1:800189/91‑1 (MQ=255)

                                                                            gAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGcc                >  1:2456114/1‑91 (MQ=255)

                                                                                gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt            <  1:2221869/91‑1 (MQ=255)

                                                                                gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt            <  1:4077404/91‑1 (MQ=255)

                                                                                gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt            >  1:3235868/1‑91 (MQ=255)

                                                                                gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt            <  1:3231858/91‑1 (MQ=255)

                                                                                gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt            <  1:3201140/91‑1 (MQ=255)

                                                                                gTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGtt            >  1:1733470/1‑91 (MQ=255)

                                                                                 tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaat           <  1:1108984‑M2/91‑52 (MQ=255)

                                                                                 tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaat           <  1:1109175‑M2/91‑52 (MQ=255)

                                                                                 tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGttt           <  1:219918/91‑1 (MQ=255)

                                                                                 tATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGttt           >  1:3967887/1‑91 (MQ=255)

                                                                                  aTGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTc          <  1:2878789/91‑1 (MQ=255)

                                                                                  aTGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTc          <  1:1732687/91‑1 (MQ=255)

                                                                                  aTGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTc          >  1:4037240/1‑91 (MQ=255)

                                                                                   tGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCa         >  1:2138773/1‑91 (MQ=255)

                                                                                     aTTGTGtctttaggtgcacaaggtgcattcgctaagcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccgg       <  1:1563276‑M1/91‑86 (MQ=255)

                                                                                     aTTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCaaa       >  1:3266452/1‑91 (MQ=255)

                                                                                      ttGTGtctttaggtgcacaaggtgcattcgctaagcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggt      <  1:3055957‑M1/91‑87 (MQ=255)

                                                                                      ttGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggt      <  1:2119753‑M2/91‑57 (MQ=255)

                                                                                      ttGTGCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggt      <  1:2119464‑M2/91‑57 (MQ=255)

                                                                                        gtgtctttaggtgcacaaggtgcattcgctaagcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttg    >  1:3670513‑M1/1‑3 (MQ=255)

                                                                                        gtgtctttaggtgcacaaggtgcattcgctaagcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttg    >  1:1215639‑M1/1‑3 (MQ=255)

                                                                                        gtgCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttg    <  1:2834370‑M2/91‑59 (MQ=255)

                                                                                        gtgCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttg    <  1:2834458‑M2/91‑59 (MQ=255)

                                                                                        gtgCTTAGCGAATGCACCTTGTGCACCTAAAGAGACAATAATCCACTCAATCCCTTCGACTAAGGGTTGTGACACTGCCTGTTTCAAACtt    <  1:3683011/91‑1 (MQ=255)

                                                                                          gtctttaggtgcacaaggtgcattcgctaagcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttggt  >  1:504523‑M1/1‑1 (MQ=255)

                                                                                          gCTTAGCGAATGCACCTTGTGCACCTAAAGGCACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTc  <  1:1471019/91‑1 (MQ=255)

                                                                                          gCTTAGCGAATGCACCTTGTGCACCTAAAGAcacaatcatacattctatagagtgaatattccgacaataagtgtattaaatccggttggt  <  1:1542548‑M2/91‑61 (MQ=255)

                                                                                          gCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTc  <  1:1824469/91‑1 (MQ=255)

AAGTAATTCCAGCAACTGTAGAATCACCTGAACCAACCGGATTTAATACACTTATTGTCGGAATATTCACTCTATAGAATGTATGATTGTGCTTAGCGAATGCACCTTGTGCACCTAAAGACACAATAATCCACTCAATCCCTTCGAATAAGGGTTGTGACACTGCCTGTTTCAAACTTTC  >  USA300TCH1516_ALE/2331135‑2331315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.