| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2341657 | 112 (1.140) | 9 (0.100) | 4/146 | NT | 8.4% | intergenic (‑78/+133) | mepM_2/USA300HOU_RS11950 | Murein DD‑endopeptidase MepM/putative hydrolase |
| ? | USA300TCH1516_ALE | = 2341714 | 95 (1.060) | intergenic (‑135/+76) | mepM_2/USA300HOU_RS11950 | Murein DD‑endopeptidase MepM/putative hydrolase | |||||
CAAAGTTTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2341561‑2341657‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaatcgACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAGGAA < USA300TCH1516_ALE/2341714‑2341627 CAAAGTTTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCT < 1:2813883/91‑1 AAGTTTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGA < 1:587272/91‑1 AAGTTTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGA > 1:3147862/1‑91 TTTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATC < 1:571354/91‑1 TTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCG > 1:1391856/1‑91 TTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCG > 1:1391797/1‑91 CAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGA < 1:405222/91‑1 GTTCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACG < 1:2021305/91‑1 GTTCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACG < 1:3851415/91‑1 GTTCCTGCGTCATTTTTGCGCTACCGGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACG < 1:3851445/91‑1 TTCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGA < 1:776690/91‑1 TTCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGA < 1:776652/91‑1 TTCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGA < 1:1470369/91‑1 TCCTGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGAT < 1:2821810/91‑1 TCCAGCGTCATTTTTGCGCTACCTGAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTGAGTGTAGACGAT < 1:3212633/91‑1 GAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAG < 1:3239570/91‑1 GAATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAG > 1:504810/1‑91 AATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAGG > 1:592847/1‑91 ATCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAGGA < 1:1910466/91‑1 TCGACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAGGAA > 1:3316304/1‑91 CAAAGTTTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2341561‑2341657‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaatcgACTACACTTTAGCTTTAAAAAATTATTTATATGTTGATTTATCCAATTAAGTGTAGACGATTCAGGTAGCGCAAAAATGACGCAGGAA < USA300TCH1516_ALE/2341714‑2341627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |