BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2341657	112 (1.140)	9 (0.100)	4/146	NT	8.4%	intergenic (‑78/+133)	mepM_2/USA300HOU_RS11950	Murein DD‑endopeptidase MepM/putative hydrolase
*	?	USA300TCH1516_ALE	= 2341714	95 (1.060)	9 (0.100)	4/146	NT	8.4%	intergenic (‑135/+76)	mepM_2/USA300HOU_RS11950	Murein DD‑endopeptidase MepM/putative hydrolase

Only 100 of 155 total aligned reads displayed.

TTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAA  >  USA300TCH1516_ALE/2341567‑2341746

ttgtttTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCG                                                                                           >  1:1391856‑M1/1‑91 (MQ=255)

 tgtttTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTAACTGAATCGt                                                                                          >  1:3972278/1‑91 (MQ=255)

  gtttTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTc                                                                                         <  1:978881/91‑1 (MQ=255)

  gtttTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTc                                                                                         >  1:384730/1‑91 (MQ=255)

  gtttTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTc                                                                                         >  1:145914/1‑91 (MQ=255)

  gtttTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTc                                                                                         >  1:384416/1‑91 (MQ=255)

   ttttATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCt                                                                                        <  1:2217927/91‑1 (MQ=255)

     ttATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTac                                                                                      <  1:2264362/91‑1 (MQ=255)

       aTTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTacac                                                                                    <  1:1945917/91‑1 (MQ=255)

        ttCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACt                                                                                   <  1:2328781/91‑1 (MQ=255)

        ttCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTCCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACt                                                                                   >  1:255281/1‑91 (MQ=255)

          cATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTa                                                                                 <  1:3210470/91‑1 (MQ=255)

            tatataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAAt                                                                               >  1:1870708/1‑91 (MQ=255)

            tatataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAAt                                                                               <  1:3913466/91‑1 (MQ=255)

            tatataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAAt                                                                               >  1:3447992/1‑91 (MQ=255)

             atataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAAtt                                                                              >  1:718394/1‑91 (MQ=255)

              tataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTg                                                                             >  1:3563453/1‑91 (MQ=255)

              tataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTg                                                                             <  1:2213339/91‑1 (MQ=255)

               ataCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTgg                                                                            <  1:1061813/91‑1 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           >  1:2922297/1‑91 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           <  1:4132945/91‑1 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           <  1:4132655/91‑1 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           <  1:1785670/91‑1 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           <  1:1209967/91‑1 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           >  1:3955566/1‑91 (MQ=255)

                taCTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGa                                                                           >  1:931583/1‑91 (MQ=255)

                  cTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATa                                                                         <  1:2840335/91‑1 (MQ=255)

                   ttAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATaa                                                                        <  1:4100578/91‑1 (MQ=255)

                     aaCCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAAt                                                                      <  1:506786/91‑1 (MQ=255)

                      aCCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATc                                                                     >  1:610909/1‑91 (MQ=255)

                         tattatattaATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAAc                                                                  >  1:3452243/1‑91 (MQ=255)

                                 taATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaat                                                          >  1:604843/1‑91 (MQ=255)

                                 taATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaat                                                          <  1:2600760/91‑1 (MQ=255)

                                 taATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaat                                                          <  1:2600611/91‑1 (MQ=255)

                                  aaTTTTGGTATCAATTCTTTCTCCAGTTCCTGTGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaata                                                         >  1:1672252/1‑91 (MQ=255)

                                  aaTTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaata                                                         <  1:2551624/91‑1 (MQ=255)

                                  aaTTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaata                                                         >  1:712405/1‑91 (MQ=255)

                                  aaTTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaata                                                         <  1:202283/91‑1 (MQ=255)

                                   aTTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATataaataa                                                        <  1:3279822/91‑1 (MQ=255)

                                       tGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAAtttt                                                    <  1:4037127/91‑1 (MQ=255)

                                         gTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAAtttttt                                                  <  1:2578745/91‑1 (MQ=255)

                                         gTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAAtttttt                                                  <  1:3879980/91‑1 (MQ=255)

                                         gTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAAtttttt                                                  <  1:2550442/91‑1 (MQ=255)

                                          tATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTa                                                 >  1:1856737/1‑91 (MQ=255)

                                           aTCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTaa                                                <  1:2535741/91‑1 (MQ=255)

                                           aTCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTaa                                                <  1:2535593/91‑1 (MQ=255)

                                            tCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTaaa                                               <  1:2866452/91‑1 (MQ=255)

                                            tCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTaaa                                               <  1:1230944/91‑1 (MQ=255)

                                            tCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTaaa                                               >  1:3221712/1‑91 (MQ=255)

                                            tCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTaaa                                               <  1:74995/91‑1 (MQ=255)

                                                ttctttctCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTa                                           >  1:2576724/1‑91 (MQ=255)

                                                  ctttctCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTaaa                                         >  1:3017470/1‑91 (MQ=255)

                                                   tttctCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAg                                        <  1:1777344/91‑1 (MQ=255)

                                                    ttctCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAgt                                       <  1:2967000/91‑1 (MQ=255)

                                                     tctcCAGTTGCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGATAAAgtg                                      >  1:2079509/1‑91 (MQ=255)

                                                      ctcCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAgtgt                                     <  1:2315438/91‑1 (MQ=255)

                                                      ctcCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAgtgt                                     <  1:2155884/91‑1 (MQ=255)

                                                        ccAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAg                                   <  1:148939/91‑1 (MQ=255)

                                                        ccAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAg                                   >  1:3152836/1‑91 (MQ=255)

                                                        ccAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAg                                   <  1:3619568/91‑1 (MQ=255)

                                                         cAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtaga                                  <  1:405222‑M1/91‑58 (MQ=255)

                                                         cAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGt                                  >  1:1471131/1‑91 (MQ=255)

                                                           gTTCCTGCGTCATTTTTGCGCTACCTGAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacg                                <  1:2021305‑M1/91‑60 (MQ=255)

                                                           gTTCCTGCGTCATTTTTGCGCTACCTGAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacg                                <  1:3851415‑M1/91‑60 (MQ=255)

                                                            ttCCTGCGTCATTTTTGCGCTACCTGAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacga                               <  1:776652‑M1/91‑61 (MQ=255)

                                                            ttCCTGCGTCATTTTTGCGCTACCTGAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacga                               <  1:776690‑M1/91‑61 (MQ=255)

                                                            ttCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcga                               >  1:3316304‑M2/1‑88 (MQ=255)

                                                             tCCTGCGTCATTTTTGCGCTACCTGAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacgat                              <  1:2821810‑M1/91‑62 (MQ=255)

                                                             tCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgat                              <  1:1910466‑M2/91‑5 (MQ=255)

                                                              ccTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgatt                             >  1:592847‑M2/1‑86 (MQ=255)

                                                               cTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattc                            <  1:3239570‑M2/91‑7 (MQ=255)

                                                                  cGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCAcc                         <  1:546328/91‑1 (MQ=255)

                                                                   gTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCa                        <  1:108584/91‑1 (MQ=255)

                                                                     cATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCata                      <  1:368487/91‑1 (MQ=255)

                                                                       tttttGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATAtt                    <  1:351761/91‑1 (MQ=255)

                                                                        ttttGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATAttt                   <  1:1913664/91‑1 (MQ=255)

                                                                           tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                >  1:3901908/1‑91 (MQ=255)

                                                                           tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                >  1:3902654/1‑91 (MQ=255)

                                                                           tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                <  1:430817/91‑1 (MQ=255)

                                                                           tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                >  1:3143594/1‑91 (MQ=255)

                                                                            gcgcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTa               >  1:3005228/1‑91 (MQ=255)

                                                                             cgcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTaa              >  1:157431/1‑91 (MQ=255)

                                                                              gcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAat             >  1:219023/1‑91 (MQ=255)

                                                                               cTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatc            <  1:934203/91‑1 (MQ=255)

                                                                                tACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatca           <  1:270232/91‑1 (MQ=255)

                                                                                 aCCTGAATCGTCTACGCTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatcat          >  1:3532762/1‑91 (MQ=255)

                                                                                  ccTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatcatc         >  1:3610431/1‑91 (MQ=255)

                                                                                     gAATCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacgattcaggtagcgcaaaaatgacgcag      >  1:504810‑M1/1‑6 (MQ=255)

                                                                                      aaTCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacgattcaggtagcgcaaaaatgacgcagg     >  1:592847‑M1/1‑5 (MQ=255)

                                                                                      aaTCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCtt     <  1:628215/91‑1 (MQ=255)

                                                                                       aTCGTCTACACTCAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgctgga    <  1:3212633‑M2/91‑31 (MQ=255)

                                                                                        tCGactacactttagctttaaaaaattatttatatgttgatttatccaattaagtgtagacgattcaggtagcgcaaaaatgacgcaggaa   >  1:3316304‑M1/1‑3 (MQ=255)

                                                                                        tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaa   <  1:776690‑M2/91‑32 (MQ=255)

                                                                                        tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaa   <  1:1470369‑M2/91‑32 (MQ=255)

                                                                                        tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaa   >  1:2479939/1‑91 (MQ=255)

                                                                                        tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaa   >  1:2480605/1‑91 (MQ=255)

                                                                                        tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaa   >  1:362957/1‑91 (MQ=255)

                                                                                         cGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattccggtagcgcaaaaatgacgcaggaac  <  1:3851445‑M2/91‑33 (MQ=255)

                                                                                         cGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaac  <  1:3851415‑M2/91‑33 (MQ=255)

                                                                                         cGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaaa  >  1:2685163/1‑91 (MQ=255)

TTGTTTTATTCATATATACTTAACCTATTATATTAATTTTGGTATCAATTCTTTCTCCAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAA  >  USA300TCH1516_ALE/2341567‑2341746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.