BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2341657	112 (1.140)	9 (0.100)	4/146	NT	8.4%	intergenic (‑78/+133)	mepM_2/USA300HOU_RS11950	Murein DD‑endopeptidase MepM/putative hydrolase
*	?	USA300TCH1516_ALE	= 2341714	95 (1.060)	9 (0.100)	4/146	NT	8.4%	intergenic (‑135/+76)	mepM_2/USA300HOU_RS11950	Murein DD‑endopeptidase MepM/putative hydrolase

Only 100 of 126 total aligned reads displayed.

CAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATCATACTT  >  USA300TCH1516_ALE/2341624‑2341804

cAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGt                                                                                            >  1:1471131/1‑91 (MQ=255)

   ttCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcga                                                                                         >  1:3316304‑M2/1‑88 (MQ=255)

     ccTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgatt                                                                                       >  1:592847‑M2/1‑86 (MQ=255)

      ctccGTCATTTTTGCGCTACCTGAATCGTCTACACTTAACTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTc                                                                                      <  1:2698594/88‑1 (MQ=255)

      cTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattc                                                                                      >  1:504810‑M2/1‑85 (MQ=255)

      cTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattc                                                                                      <  1:3239570‑M2/91‑7 (MQ=255)

         cGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCAcc                                                                                   <  1:546328/91‑1 (MQ=255)

         cGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCAcc                                                                                   <  1:2551039/91‑1 (MQ=255)

         cGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCAcc                                                                                   >  1:579516/1‑91 (MQ=255)

          gTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCa                                                                                  <  1:108584/91‑1 (MQ=255)

          gTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCa                                                                                  <  1:1928911/91‑1 (MQ=255)

           tCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCat                                                                                 <  1:2472054/91‑1 (MQ=255)

            cATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCata                                                                                <  1:368487/91‑1 (MQ=255)

              tttttGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATAtt                                                                              <  1:351761/91‑1 (MQ=255)

               ttttGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATAttt                                                                             <  1:1913664/91‑1 (MQ=255)

                  tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                                                                          <  1:430817/91‑1 (MQ=255)

                  tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                                                                          >  1:685727/1‑91 (MQ=255)

                  tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                                                                          >  1:3902654/1‑91 (MQ=255)

                  tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                                                                          >  1:3143594/1‑91 (MQ=255)

                  tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                                                                          >  1:3901908/1‑91 (MQ=255)

                  tGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCt                                                                          >  1:3902144/1‑91 (MQ=255)

                   gcgcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTa                                                                         >  1:3005228/1‑91 (MQ=255)

                    cgcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTaa                                                                        >  1:157431/1‑91 (MQ=255)

                     gcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAat                                                                       >  1:219023/1‑91 (MQ=255)

                     gcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAat                                                                       >  1:218875/1‑91 (MQ=255)

                     gcTACCTGAATCGTCTACACTTAATTGGATAAATCAACATAGAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAat                                                                       >  1:3587026/1‑91 (MQ=255)

                      cTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatc                                                                      <  1:934203/91‑1 (MQ=255)

                       tACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatca                                                                     <  1:270232/91‑1 (MQ=255)

                        aCCTGAATCGTCTACGCTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAatcat                                                                    >  1:3532762/1‑91 (MQ=255)

                              aTCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcagga                                                              <  1:2821810‑M2/91‑31 (MQ=255)

                               tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaa                                                             <  1:776690‑M2/91‑32 (MQ=255)

                               tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaa                                                             <  1:1470369‑M2/91‑32 (MQ=255)

                               tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaa                                                             >  1:2479939/1‑91 (MQ=255)

                               tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaa                                                             >  1:2480605/1‑91 (MQ=255)

                               tCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaa                                                             >  1:362957/1‑91 (MQ=255)

                                cGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaac                                                            <  1:2021305‑M2/91‑33 (MQ=255)

                                cGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaac                                                            <  1:3851415‑M2/91‑33 (MQ=255)

                                cGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTaaa                                                            >  1:2685163/1‑91 (MQ=255)

                                  tCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTcgattcaggtagcgcaaaaatgacgcaggaactg                                                          <  1:405222‑M2/91‑35 (MQ=255)

                                  tCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaata                                                          <  1:3443605/91‑1 (MQ=255)

                                   cTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatat                                                         <  1:3473426/91‑1 (MQ=255)

                                   cTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatat                                                         >  1:2702325/1‑91 (MQ=255)

                                    tACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatatt                                                        <  1:191065/91‑1 (MQ=255)

                                    tACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatatt                                                        >  1:3086501/1‑91 (MQ=255)

                                     acacTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatatta                                                       >  1:1528381/1‑91 (MQ=255)

                                        cTTAATTGGATAAATCAACATATAAATAAGTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatattaata                                                    <  1:3321135/91‑1 (MQ=255)

                                         ttAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatattaatat                                                   <  1:3297732/91‑1 (MQ=255)

                                         ttAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAaatattaatat                                                   <  1:2155047/91‑1 (MQ=255)

                                              tGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCa                                              <  1:2782610/91‑1 (MQ=255)

                                              tGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCa                                              >  1:485434/1‑91 (MQ=255)

                                               ggATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCAc                                             >  1:3575966/1‑91 (MQ=255)

                                               ggATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCAc                                             <  1:1826476/91‑1 (MQ=255)

                                                gATAAATGAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACt                                            <  1:2068632/91‑1 (MQ=255)

                                                gATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACt                                            <  1:3686794/91‑1 (MQ=255)

                                                gATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACt                                            <  1:3686928/91‑1 (MQ=255)

                                                gATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACt                                            >  1:2938773/1‑91 (MQ=255)

                                                 aTAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACtt                                           <  1:604800/91‑1 (MQ=255)

                                                  tAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTa                                          <  1:1255072/91‑1 (MQ=255)

                                                  tAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTa                                          <  1:666754/91‑1 (MQ=255)

                                                   aaaTCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTaa                                         <  1:1979575/91‑1 (MQ=255)

                                                    aaTCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTaaa                                        <  1:2463818/91‑1 (MQ=255)

                                                    aaTCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTaaa                                        >  1:3714610/1‑91 (MQ=255)

                                                     aTCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTaaaa                                       <  1:2996399/91‑1 (MQ=255)

                                                         aCATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGta                                   <  1:1022889/91‑1 (MQ=255)

                                                         aCATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGta                                   >  1:1032615/1‑91 (MQ=255)

                                                         aCATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGta                                   <  1:1312257/91‑1 (MQ=255)

                                                         aCATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGta                                   >  1:290620/1‑91 (MQ=255)

                                                          cATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGtat                                  >  1:307496/1‑91 (MQ=255)

                                                          cATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGtat                                  >  1:3158037/1‑91 (MQ=255)

                                                           atatAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGtata                                 <  1:463467/91‑1 (MQ=255)

                                                            tataAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATAc                                <  1:182335/91‑1 (MQ=255)

                                                               aaataaTTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACata                             >  1:878074/1‑91 (MQ=255)

                                                               aaataaTTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACata                             <  1:1191995/91‑1 (MQ=255)

                                                                aataatTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACatat                            >  1:2219676/1‑91 (MQ=255)

                                                                   aatTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCAc                         <  1:1881825/91‑1 (MQ=255)

                                                                   aatTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCAc                         <  1:2090646/91‑1 (MQ=255)

                                                                   aatTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCAc                         <  1:1881630/91‑1 (MQ=255)

                                                                      tttttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCa                      >  1:1135099/1‑91 (MQ=255)

                                                                      tttttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCa                      >  1:1134620/1‑91 (MQ=255)

                                                                       ttttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCaa                     >  1:66772/1‑91 (MQ=255)

                                                                       ttttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCaa                     <  1:3478652/91‑1 (MQ=255)

                                                                         ttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACt                   >  1:966686/1‑91 (MQ=255)

                                                                         ttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACt                   >  1:945562/1‑91 (MQ=255)

                                                                         ttAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACt                   >  1:945544/1‑91 (MQ=255)

                                                                          tAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTa                  <  1:3548680/91‑1 (MQ=255)

                                                                           aaaGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTaa                 <  1:478957/91‑1 (MQ=255)

                                                                            aaGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAAt                <  1:3771981/91‑1 (MQ=255)

                                                                             aGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTT‑AAAAGTATACATATCACTCAACTAATCa              <  1:578247/91‑1 (MQ=255)

                                                                              gCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCa              <  1:2444048/91‑1 (MQ=255)

                                                                              gCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCa              >  1:814222/1‑91 (MQ=255)

                                                                              gCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCa              <  1:2443699/91‑1 (MQ=255)

                                                                              gCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCa              <  1:142540/91‑1 (MQ=255)

                                                                               cTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCaa             <  1:1119733/91‑1 (MQ=255)

                                                                                tAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCaat            <  1:1395912/91‑1 (MQ=255)

                                                                                   aGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCaataat         <  1:731792/91‑1 (MQ=255)

                                                                                    gtgtAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATc        >  1:2820490/1‑91 (MQ=255)

                                                                                      gtAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATCAt      <  1:3722557/91‑1 (MQ=255)

                                                                                      gtAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATCAt      >  1:1031075/1‑91 (MQ=255)

                                                                                        aGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATCATAc    <  1:4002972/91‑1 (MQ=255)

                                                                                          tCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATCATACtt  >  1:2532644/1‑91 (MQ=255)

CAGTTCCTGCGTCATTTTTGCGCTACCTGAATCGTCTACACTTAATTGGATAAATCAACATATAAATAATTTTTTAAAGCTAAAGTGTAGTCGATTCACCATATTTTCTAATCATCCCTTAAATATTAATATTTGCACTTAAAAAGTATACATATCACTCAACTAATCAATAATCATACTT  >  USA300TCH1516_ALE/2341624‑2341804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.