| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2368218 | 73 (0.740) | 7 (0.080) | 6/146 | NT | 9.3% | coding (123/354 nt) | rplV | 50S ribosomal protein L22 |
| ? | USA300TCH1516_ALE | = 2368244 | 70 (0.780) | coding (97/354 nt) | rplV | 50S ribosomal protein L22 | |||||
TTTAACTACTAATTCATCTGTGTTCATGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2368125‑2368218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagctATTGCAATTTTAAAATTAACAAACAAAGCTTCATCACCAGTAATTGAAAAAGTATTAATGTCCGCTTTAGCTAATGCTGAACATAACTA < USA300TCH1516_ALE/2368244‑2368156 TTTAACTACTAATTCATCTGTGTTCATGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAA < 1:826681/91‑1 TTAACTACTAATTCATCTGTGTTCATGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAG < 1:1167954/91‑1 TTAACTACTAATTCATCTGTGTTCATGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAG < 1:71464/91‑1 CATGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTATTGCAATTTTAAAATTAACA < 1:258084/91‑1 TGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTATTGCAATTTTAAAATTAACAAA < 1:3002136/91‑1 CATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGCTGAAGCTATTGCAATTTTAAAATTAACAAACAA < 1:3248088/91‑1 TAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTATTGCAATTTTAAAATTAACAAACAAAG < 1:1395639/91‑1 ATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGCTGAAGCTATTGCAATTTTAAAATTAACAAACAAAGCTTCA < 1:1437393/91‑1 ATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGCTGAAGCTATTGCAATTTTAAAATTAACAAACAAAGCTTCA < 1:2732182/91‑1 GTTCATCATTAGCTAAAGCGGACATCAATACTTTTTCAAGTACTGGTGATGAAGCTATTGCAATTTTAAAATTAACAAACAAAGCTTCATC < 1:3860126/91‑1 GAAGCTATTGCAATTTTAAAATTAACAAACAAAGCTTCATCACCAGTAATTGAAAAAGTATTAATGTCCGCTTTAGCTAATGCTGAACATA > 1:3188419/1‑91 AGCTATTGCAATTTTAAAATTAACAAACAAAGCTTCATCACCAGTAATTGAAAAAGTATTAATGTCCGCTTTAGCTAATGCTGAACATAAC < 1:3147125/91‑1 GCTATTGCAATTTTAAAATTAACAAACAAAGCTTCATCACCAGTAATTGAAAAAGTATTAATGTCCGCTTTAGCTAATGCTGAACATAACT > 1:2961953/1‑91 CTATTGCAATTTTAAAATTAACAAACAAAGCTTCATCACCAGTAATTGAAAAAGTATTAATGTCCGCTTTAGCTAATGCTGAACATAACTA < 1:2345333/91‑1 TTTAACTACTAATTCATCTGTGTTCATGTCATAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2368125‑2368218‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaagctATTGCAATTTTAAAATTAACAAACAAAGCTTCATCACCAGTAATTGAAAAAGTATTAATGTCCGCTTTAGCTAATGCTGAACATAACTA < USA300TCH1516_ALE/2368244‑2368156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |