New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2368218	73 (0.740)	7 (0.080)	6/146	NT	9.3%	coding (123/354 nt)	rplV	50S ribosomal protein L22
	?	USA300TCH1516_ALE	= 2368244	70 (0.780)					coding (97/354 nt)	rplV	50S ribosomal protein L22

TAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCTTTTGC  >  USA300TCH1516_ALE/2368156‑2368334                                                                                         |                                                                                           tAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATag                                                                                          <  1:2345333‑M2/91‑3 (MQ=255)  aGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATagc                                                                                         >  1:2961953‑M2/1‑88 (MQ=255)   gTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATagct                                                                                        <  1:3147125‑M2/91‑5 (MQ=255)     tATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATagcttc                                                                                      >  1:3188419‑M2/1‑85 (MQ=255)       tGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTcag                                                                                    <  1:2466756/91‑1 (MQ=255)        gTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAATCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTcagc                                                                                   <  1:3506256/91‑1 (MQ=255)         ttCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTcagca                                                                                  >  1:2541391/1‑91 (MQ=255)          tCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTcagcag                                                                                 <  1:778429/91‑1 (MQ=255)           cAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCagcagc                                                                                <  1:2702437/91‑1 (MQ=255)           cAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCagcagc                                                                                <  1:1620817/91‑1 (MQ=255)            aGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAgcagca                                                                               <  1:372077/91‑1 (MQ=255)            aGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAgcagca                                                                               <  1:4044006/91‑1 (MQ=255)               aTTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCAttt                                                                            >  1:3053946/1‑91 (MQ=255)                 tAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCAttttt                                                                          >  1:1632968/1‑91 (MQ=255)                  aGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTa                                                                         >  1:925673/1‑91 (MQ=255)                  aGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTa                                                                         >  1:924553/1‑91 (MQ=255)                  aGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTa                                                                         <  1:1595708/91‑1 (MQ=255)                  aGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTa                                                                         >  1:3503786/1‑91 (MQ=255)                  aGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTa                                                                         >  1:3504199/1‑91 (MQ=255)                    cTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTAcc                                                                       <  1:3423528/91‑1 (MQ=255)                    cTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTAcc                                                                       <  1:1604041/91‑1 (MQ=255)                      aaaGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACctc                                                                     >  1:1917377/1‑91 (MQ=255)                       aaGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACctct                                                                    <  1:1363642/91‑1 (MQ=255)                         gCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGa                                                                  >  1:2297359/1‑91 (MQ=255)                         gCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGa                                                                  >  1:1189880/1‑91 (MQ=255)                          cGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGAt                                                                 <  1:733821/91‑1 (MQ=255)                          cGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGAt                                                                 <  1:734588/91‑1 (MQ=255)                          cGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGAt                                                                 <  1:1423189/91‑1 (MQ=255)                          cGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGAt                                                                 <  1:97903/91‑1 (MQ=255)                             aCATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTaa                                                              >  1:3530579/1‑91 (MQ=255)                              cATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAg                                                             >  1:1944941/1‑91 (MQ=255)                              cATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAg                                                             >  1:1944842/1‑91 (MQ=255)                              cATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAg                                                             >  1:1468238/1‑91 (MQ=255)                               aTTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGt                                                            <  1:657180/91‑1 (MQ=255)                                ttAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTc                                                           <  1:1460883/91‑1 (MQ=255)                                 tAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCa                                                          <  1:2133562/91‑1 (MQ=255)                                   aTACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAg                                                        <  1:1389507/91‑1 (MQ=255)                                   aTACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAg                                                        <  1:1389200/91‑1 (MQ=255)                                   aTACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAg                                                        <  1:1391033/91‑1 (MQ=255)                                     aCTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGaa                                                      >  1:3152904/1‑91 (MQ=255)                                     aCTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGaa                                                      >  1:3152887/1‑91 (MQ=255)                                     aCTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGaa                                                      >  1:1615415/1‑91 (MQ=255)                                        ttttCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTa                                                   >  1:3372236/1‑91 (MQ=255)                                         tttCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAg                                                  <  1:3928649/91‑1 (MQ=255)                                          ttCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGt                                                 >  1:3236937/1‑91 (MQ=255)                                           tCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTc                                                >  1:1025448/1‑91 (MQ=255)                                            cAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCt                                               <  1:1722616/91‑1 (MQ=255)                                            cAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCt                                               <  1:3912040/91‑1 (MQ=255)                                              aTTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTa                                             >  1:3430506/1‑91 (MQ=255)                                               ttACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTAc                                            >  1:2931768/1‑91 (MQ=255)                                               ttACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTAc                                            >  1:478311/1‑91 (MQ=255)                                               ttACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTAc                                            >  1:478463/1‑91 (MQ=255)                                                  cTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACttt                                         >  1:1145297/1‑91 (MQ=255)                                                  cTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACttt                                         >  1:781587/1‑91 (MQ=255)                                                  cTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACttt                                         >  1:148871/1‑91 (MQ=255)                                                    ggTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTAc                                       <  1:446912/91‑1 (MQ=255)                                                    ggTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTAc                                       >  1:1034644/1‑91 (MQ=255)                                                      tgatgaAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGa                                     >  1:494594/1‑91 (MQ=255)                                                      tgatgaAGCTTTGTTTGTTAATATTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGa                                     >  1:188203/1‑91 (MQ=255)                                                       gatgaAGCTTTGTTTGTTAATTTTAAAATTGCAATagcttcatcaccagtacttgaaaaagtattgatgtccgctttagctaatgatgaac                                    <  1:3860126‑M2/91‑57 (MQ=255)                                                       atctaaGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAg                                    <  1:282325/87‑1 (MQ=255)                                                        atgaAGCTTTGTTTGTTAATTTTAAAATTGCAATCGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAgg                                   >  1:1216266/1‑91 (MQ=255)                                                         tgaAGCTTTGTTTGTTAATTTTAAAATTGCAATagcttcagcaccagtaattgaaaaagtattaatgtccgctttagctaatgctgaacat                                  <  1:2732182‑M2/91‑59 (MQ=255)                                                         tgaAGCTTTGTTTGTTAATTTTAAAATTGCAATagcttcagcaccagtaattgaaaaagtattaatgtccgctttagctaatgctgaacat                                  <  1:1437393‑M2/91‑59 (MQ=255)                                                          gaAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTg                                 <  1:3584081/91‑1 (MQ=255)                                                            aGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTgtg                               <  1:1700148/91‑3 (MQ=255)                                                            aGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCg                               >  1:1541054/1‑91 (MQ=255)                                                             gCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGa                              >  1:2995798/1‑91 (MQ=255)                                                             gCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGa                              >  1:2996061/1‑91 (MQ=255)                                                              cTTTGTTTGTTAATTTTAAAATTGCAATagcttcatcaccagtaattgaaaaagtattaatgtccgctttagctaatgctgaacataacta                             <  1:1395639‑M2/91‑64 (MQ=255)                                                                ttgtttgtTAATTTTAAAATTGCAATagcttcagcaccagtaattgaaaaagtattaatgtccgctttagctaatgctgaacataactatg                           <  1:3248088‑M2/91‑66 (MQ=255)                                                                ttgtttgtTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTc                           >  1:2464775/1‑91 (MQ=255)                                                                   tttgttAATTTTAAAATTGCAATagcttcatcaccagtaattgaaaaagtattaatgtccgctttagctaatgctgaacataactatgaca                        <  1:3002136‑M2/91‑69 (MQ=255)                                                                     tgttAATTTTAAAATTGCAATagcttcatcaccagtaattgaaaaagtattaatgtccgctttagctaatgctgaacataactatgacatg                      <  1:258084‑M2/91‑71 (MQ=255)                                                                      gttAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTg                     <  1:2037648/91‑1 (MQ=255)                                                                       ttAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGt                    <  1:4089265/91‑1 (MQ=255)                                                                       ttAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGt                    <  1:4089546/91‑1 (MQ=255)                                                                       ttAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGt                    <  1:680851/91‑1 (MQ=255)                                                                            tttAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAg               <  1:1010413/91‑1 (MQ=255)                                                                            tttAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATCAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAg               >  1:3592192/1‑91 (MQ=255)                                                                             ttAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGc              >  1:2223885/1‑91 (MQ=255)                                                                              tAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCa             <  1:80329/91‑1 (MQ=255)                                                                               aaaaTTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCaa            >  1:3384734/1‑91 (MQ=255)                                                                                aaaTTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAAc           <  1:2384993/91‑1 (MQ=255)                                                                                 aaTTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAAcc          >  1:1922719/1‑91 (MQ=255)                                                                                  aTTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCg         <  1:2065353/91‑1 (MQ=255)                                                                                    tGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCt       <  1:84293/91‑1 (MQ=255)                                                                                       aaTAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCtttt    >  1:246477/1‑91 (MQ=255)                                                                                       aaTAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCtttt    >  1:1461738/1‑91 (MQ=255)                                                                                       aaTAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCtttt    >  1:1068284/1‑91 (MQ=255)                                                                                        aTAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCTTTTg   <  1:47699/91‑1 (MQ=255)                                                                                        aTAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCTTTTg   <  1:4125829/91‑1 (MQ=255)                                                                                         tAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCTTTTGc  <  1:2879238/91‑1 (MQ=255)                                                                                         |                                                                                           TAGTTATGTTCAGCATTAGCTAAAGCGGACATTAATACTTTTTCAATTACTGGTGATGAAGCTTTGTTTGTTAATTTTAAAATTGCAATAGCTTCAGCAGCATTTTTACCTCTGATTAAGTCAAGAACTAGTCTTACTTTACGAGGTGCGATTCTTATTGTTCTAGCAACCGCTTTTGC  >  USA300TCH1516_ALE/2368156‑2368334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.