| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2368663 = | 52 (0.530) | 11 (0.120) | 7/148 | NT | 17.3% | intergenic (‑16/+51) | rpsS/rplB | 30S ribosomal protein S19/50S ribosomal protein L2 |
| ? | USA300TCH1516_ALE | 2368705 = | 57 (0.630) | intergenic (‑58/+9) | rpsS/rplB | 30S ribosomal protein S19/50S ribosomal protein L2 | |||||
AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2368758‑2368663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT > USA300TCH1516_ALE/2368705‑2368794 AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATA > 1:2710212/1‑91AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATA > 1:2710503/1‑91 AATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAA < 1:1888364/91‑1 ATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAAT < 1:2441798/91‑1 TCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAAGCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATA > 1:4134782/1‑91 CATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAA < 1:4052427/91‑1 CGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGCGTGCAGCTTTAAGCCGCACACCCA‑AATAAGTTGATTATATTATTTTTTCT < 1:1307702/91‑1 AAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAAC > 1:3163149/1‑91 TAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCAAATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATA > 1:1698906/1‑91 TATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGA > 1:1800305/1‑91 TTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTT > 1:2595059/1‑91 TTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTT > 1:2940487/1‑91 TTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTT > 1:2940832/1‑91 TGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTT > 1:835398/1‑91 TGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTT > 1:2898686/1‑91 GGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTT > 1:2513347/1‑91 GGGTGTGCGGCTTAAAGCTGCACGCACATAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTT > 1:789102/1‑91 AATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTA < 1:458297/91‑1 ATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAG < 1:3578558/91‑1 ATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAG < 1:1836974/91‑1 TAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGG < 1:627441/91‑1 AGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTT < 1:4083911/91‑1 GTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT < 1:2808139/91‑1 AAATCATCAGACAAACTTATCGTTCGTGGACGTAAGAAAAAATAATATAATCAACTTATTTGGGTGTGCGGCTTAAAGCTGCACGCACATAATAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2368758‑2368663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT > USA300TCH1516_ALE/2368705‑2368794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |