| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2368663 = | 52 (0.530) | 11 (0.120) | 7/148 | NT | 17.3% | intergenic (‑16/+51) | rpsS/rplB | 30S ribosomal protein S19/50S ribosomal protein L2 |
| ? | USA300TCH1516_ALE | 2368705 = | 57 (0.630) | intergenic (‑58/+9) | rpsS/rplB | 30S ribosomal protein S19/50S ribosomal protein L2 | |||||
GACGAAAGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT > USA300TCH1516_ALE/2368615‑2368794 | gacgaAAGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGt < 1:434009/91‑1 (MQ=255)gacgaAAGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGt > 1:62331/1‑91 (MQ=255) aaaGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGat > 1:2586621/1‑91 (MQ=255) aaaGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGat > 1:2511123/1‑91 (MQ=255) aaGGTCCTTGTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGatt < 1:3968329/91‑1 (MQ=255) aGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAGGCCGCACACCCAAATAAGTTGatta > 1:3863205/1‑91 (MQ=255) aGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGatta > 1:1353455/1‑91 (MQ=255) tatcgttcgtggacgtaagaaaaaataatataatcaaCTTATTATTTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGattatatta > 1:1698906‑M1/38‑91 (MQ=255) tttttAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATattatt > 1:822809/1‑91 (MQ=255) tttttAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATattatt < 1:676607/91‑1 (MQ=255) ttttAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTAttt < 1:2921482/91‑1 (MQ=255) gttcgtggacgtaagaaaaaataatataatcaaCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTAtttt > 1:3163149‑M1/34‑91 (MQ=255) aaTACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTc < 1:3113781/91‑1 (MQ=255) aaTACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTc < 1:1840284/91‑1 (MQ=255) aaTACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTc < 1:1845690/91‑1 (MQ=255) cgtggacgtaagaaaaaataatataatcaacttatttgggcgtgcagctttaagccgcacacccaaataagTTGATTATATTATTTTTTCt < 1:1307702‑M2/20‑1 (MQ=255) aTACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCATCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCt > 1:3316721/1‑91 (MQ=255) tactacGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCtt > 1:192288/1‑91 (MQ=255) tactacGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCtt > 1:191933/1‑91 (MQ=255) ctacGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTAc < 1:24906/91‑1 (MQ=255) tacGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACg > 1:2879794/1‑91 (MQ=255) aGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCa > 1:739199/1‑91 (MQ=255) agaaaaaataatataatcaaCTTATT‑TGGGTGTGCGGCTTAAAGCTGCACGCCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCacg < 1:1307702‑M1/71‑1 (MQ=255) ccATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCacg < 1:955276/91‑1 (MQ=255) aaaataatataatcaacttatttgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCacgaac > 1:3163149‑M2/59‑91 (MQ=255) tGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCacgaacga < 1:4087131/91‑1 (MQ=255) gggCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGAt < 1:3788894/91‑1 (MQ=255) gggCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGAt < 1:4087945/91‑1 (MQ=255) gggCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGAt < 1:3788792/91‑1 (MQ=255) taatataatcaacttatttgggtgtgcggcttaaagctgcacgcaaataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATa > 1:1698906‑M2/55‑91 (MQ=255) ggCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATa > 1:4136859/1‑91 (MQ=255) ggCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATa > 1:4146282/1‑91 (MQ=255) gcgcCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATaa > 1:2245636/1‑91 (MQ=255) gcCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGt < 1:3610602/91‑1 (MQ=255) ccTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGtt > 1:1201204/1‑91 (MQ=255) ccTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGtt > 1:228642/1‑91 (MQ=255) tCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTg < 1:1081832/91‑1 (MQ=255) cccTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGt < 1:194612/91‑1 (MQ=255) ccTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTc > 1:2638838/1‑91 (MQ=255) ttcttATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCtg > 1:707963/1‑91 (MQ=255) ttcttATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCtg < 1:2294997/91‑1 (MQ=255) tcttATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCtga < 1:1197850/91‑1 (MQ=255) TTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCtgatg < 1:4052427‑M1/91‑1 (MQ=255) tatttgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCtgatga > 1:1800305‑M2/41‑91 (MQ=255) TATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGCTTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCtgatga > 1:4134782‑M1/1‑91 (MQ=255) ATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTgatgat < 1:2441798‑M1/91‑1 (MQ=255) TTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAtt < 1:1888364‑M1/91‑1 (MQ=255) ttgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttt > 1:2940487‑M2/38‑91 (MQ=255) ttgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttt > 1:2940832‑M2/38‑91 (MQ=255) ttgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttt > 1:2595059‑M2/38‑91 (MQ=255) TATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttt > 1:2710503‑M1/1‑91 (MQ=255) TATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttt > 1:2710212‑M1/1‑91 (MQ=255) tgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAtttt > 1:2898686‑M2/37‑91 (MQ=255) tgggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAtttt > 1:835398‑M2/37‑91 (MQ=255) atGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAtttt > 1:3192529/1‑91 (MQ=255) gggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttttt > 1:2513347‑M2/36‑91 (MQ=255) gggtgtgcggcttaaagctgcacgcacataataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGAttttt > 1:789102‑M2/36‑91 (MQ=255) cgtgcAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTAcc > 1:2318540/1‑91 (MQ=255) cgtgcAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTAcc > 1:1440046/1‑91 (MQ=255) gcAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCacg < 1:3420360/91‑1 (MQ=255) gcAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCacg < 1:3420400/91‑1 (MQ=255) cAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCacga < 1:3536756/91‑1 (MQ=255) aGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCacgac > 1:3247768/1‑91 (MQ=255) ttaaaGCTGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAg > 1:2919612/4‑91 (MQ=255) ttaaaGCTGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAg > 1:2960078/4‑91 (MQ=255) ttaaaGCTGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAg > 1:463025/4‑91 (MQ=255) ttaaaGCTGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAg > 1:2366914/4‑91 (MQ=255) ttaaaGCTGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAg > 1:1534249/4‑91 (MQ=255) ttaaaGCTGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTCACCACGACGAg > 1:3755113/4‑91 (MQ=255) aGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGtttt < 1:2720784/91‑1 (MQ=255) gCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTc < 1:3417833/91‑1 (MQ=255) gCCGCACACCCAAATAAGTTGATTATATTATCTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTc > 1:1741207/1‑91 (MQ=255) ccGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCt < 1:2348287/91‑1 (MQ=255) gCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTa > 1:3211789/1‑91 (MQ=255) gCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTa > 1:786674/1‑91 (MQ=255) gCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTa > 1:158261/1‑91 (MQ=255) cacaCCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTAc < 1:2721406/91‑1 (MQ=255) cacaCCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTAc < 1:1433721/91‑1 (MQ=255) cacaCCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTAc < 1:1433576/91‑1 (MQ=255) cacaCCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTAc < 1:2544037/91‑1 (MQ=255) acacCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTAcc > 1:1523508/1‑91 (MQ=255) cccAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAg > 1:3142036/1‑91 (MQ=255) ccAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGc > 1:3661297/1‑91 (MQ=255) cAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCg < 1:3071008/91‑1 (MQ=255) cAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCg < 1:665556/91‑1 (MQ=255) aaaTAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGt < 1:324041/91‑1 (MQ=255) aataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTa < 1:458297‑M2/85‑1 (MQ=255) ataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAg < 1:1836974‑M2/86‑1 (MQ=255) ataagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAg < 1:3578558‑M2/86‑1 (MQ=255) taagTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAgg < 1:627441‑M2/87‑1 (MQ=255) agTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGtt < 1:4083911‑M2/89‑1 (MQ=255) gTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGttt < 1:2808139‑M2/90‑1 (MQ=255) | GACGAAAGGTCCTTTTTTAATACTACGAGCCATTTGGGCGCCTCCCTTCTTATTATGTGCGTGCAGCTTTAAGCCGCACACCCAAATAAGTTGATTATATTATTTTTTCTTACGTCCACGAACGATAAGTTTGTCTGATGATTTTTTACCACGACGAGTTTTCTTACCAAGCGTAGGTTT > USA300TCH1516_ALE/2368615‑2368794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |