| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2375690 | 104 (1.060) | 7 (0.080) | 5/146 | NT | 6.7% | coding (334/2136 nt) | topB | DNA topoisomerase 3 |
| ? | USA300TCH1516_ALE | = 2375715 | 101 (1.130) | coding (309/2136 nt) | topB | DNA topoisomerase 3 | |||||
TAAAACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2375594‑2375690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaacAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGATTTTGGATAAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGATTAGCTC < USA300TCH1516_ALE/2375715‑2375626 TAAAACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCT < 1:2101341/91‑1 AAAACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTT < 1:3410784/91‑1 AAACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTG > 1:466835/1‑91 AACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGC < 1:592651/91‑1 AACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGC > 1:3698230/1‑91 AACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGC < 1:809302/91‑1 AACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGC > 1:3344368/1‑91 ACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCA > 1:2444947/1‑91 ACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCA > 1:2444497/1‑91 CCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAA > 1:2258503/1‑91 CCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAA > 1:2258492/1‑91 CTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAAC < 1:1504336/91‑1 ACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAAC < 1:3706483/91‑1 GAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAACTAG < 1:2537611/91‑1 AGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAACTAGT < 1:1999318/91‑1 GCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAACTAGTT < 1:2263030/91‑1 GCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAACTAGTT < 1:2261097/91‑1 GCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAACTAGTT < 1:2260846/91‑1 TCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACAGATGCTGGACGAGAAGGTGAACTAGTTGCAAG < 1:1987273/91‑1 TTGCAACAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGCTTTTGGATGAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGAT < 1:3304268/91‑1 CAACAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGATTTTGGATAAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGATTAG > 1:919241/1‑91 AACAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGATTTTGGATAAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGATTAta < 1:3621057/91‑3 CAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGATTTTGGATAAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGATTAGCTC > 1:394134/1‑91 CAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGATTTTGGATAAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGATTAGCTC < 1:766067/91‑1 TAAAACCTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2375594‑2375690‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaacAGATGCTGGACGAGAAGGTGAACTAGTTGCAAGATTGATTTTGGATAAAGTTGGTAACAAAAAGCCAATCCGTCGATTATGGATTAGCTC < USA300TCH1516_ALE/2375715‑2375626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |