BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2375690	104 (1.060)	7 (0.080)	5/146	NT	6.7%	coding (334/2136 nt)	topB	DNA topoisomerase 3
*	?	USA300TCH1516_ALE	= 2375715	101 (1.130)	7 (0.080)	5/146	NT	6.7%	coding (309/2136 nt)	topB	DNA topoisomerase 3

Only 100 of 136 total aligned reads displayed.

CTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTT  >  USA300TCH1516_ALE/2375600‑2375780

cTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAAC                                                                                            <  1:1504336‑M1/91‑1 (MQ=255)

  tgttgAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCGAAATCAATCTTGCAACTa                                                                                          <  1:1158107/91‑1 (MQ=255)

     tgAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGtt                                                                                       <  1:2217590/91‑1 (MQ=255)

     tgAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGtt                                                                                       <  1:3176857/91‑1 (MQ=255)

      gAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTc                                                                                      <  1:2744813/91‑1 (MQ=255)

         tAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCAcc                                                                                   <  1:2410150/91‑1 (MQ=255)

           gCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCtt                                                                                 >  1:4034082/1‑91 (MQ=255)

           gCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCtt                                                                                 >  1:4033859/1‑91 (MQ=255)

            cTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTtc                                                                                <  1:412620/91‑1 (MQ=255)

            cTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTtc                                                                                <  1:3069214/91‑1 (MQ=255)

              tttttAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCATTCTTGCAACTAGTTCACCTtctc                                                                              <  1:3286181/91‑1 (MQ=255)

               ttttAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCg                                                                             >  1:636197/1‑91 (MQ=255)

               ttttAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCg                                                                             >  1:3009423/1‑91 (MQ=255)

               ttttAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCg                                                                             >  1:636579/1‑91 (MQ=255)

                tttAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGt                                                                            >  1:166812/1‑91 (MQ=255)

                tttAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGt                                                                            >  1:2223388/1‑91 (MQ=255)

                  tAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTcc                                                                          >  1:2655432/1‑91 (MQ=255)

                    gTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAg                                                                        <  1:345944/91‑1 (MQ=255)

                    gTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAg                                                                        <  1:2805482/91‑1 (MQ=255)

                     tAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGc                                                                       >  1:4123151/1‑91 (MQ=255)

                       aCTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACagatgctggacgagaaggtgaac                                                                     <  1:3706483‑M1/91‑24 (MQ=255)

                       aCTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGcct                                                                     >  1:1401357/1‑89 (MQ=255)

                       aCTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCAt                                                                     >  1:3051007/1‑91 (MQ=255)

                       aCTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCAt                                                                     >  1:368229/1‑91 (MQ=255)

                       aCTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCAt                                                                     >  1:3050970/1‑91 (MQ=255)

                       aCTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTATCGTCCAGCAt                                                                     >  1:3767249/1‑91 (MQ=255)

                         tGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCt                                                                   <  1:1894000/91‑1 (MQ=255)

                          gAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTg                                                                  <  1:766067‑M2/91‑2 (MQ=255)

                           aGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACagatgctggacgagaaggtgaactagt                                                                 <  1:1999318‑M1/91‑28 (MQ=255)

                            tataaTCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTgtt                                                                <  1:3621057‑M2/89‑4 (MQ=255)

                            gCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACagatgctggacgagaaggtgaactagtt                                                                <  1:2260846‑M1/91‑29 (MQ=255)

                            gCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACagatgctggacgagaaggtgaactagtt                                                                <  1:2263030‑M1/91‑29 (MQ=255)

                             cTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTgttg                                                               >  1:919241‑M2/1‑87 (MQ=255)

                                aTCCATAATCGACGGATTGGCTTTTTGTTACCAACTTCATCCAAAAGCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTgttgcaa                                                            <  1:3304268‑M2/91‑8 (MQ=255)

                                 tCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaat                                                           <  1:2249398/91‑1 (MQ=255)

                                  ccATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaata                                                          >  1:433302/1‑91 (MQ=255)

                                      aaTCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaataataa                                                      <  1:553229/91‑1 (MQ=255)

                                       aTCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaataataat                                                     >  1:1681117/1‑91 (MQ=255)

                                        tCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAataataata                                                    >  1:270576/1‑91 (MQ=255)

                                        tCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAataataata                                                    >  1:269301/1‑91 (MQ=255)

                                          gACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATc                                                  <  1:1056845/91‑1 (MQ=255)

                                            cGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCtt                                                <  1:1554050/91‑1 (MQ=255)

                                             ggATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCttt                                               <  1:3384040/91‑1 (MQ=255)

                                                ttGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCAc                                            <  1:4076842/91‑1 (MQ=255)

                                                ttGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCAc                                            <  1:2013514/91‑1 (MQ=255)

                                                 tGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACt                                           >  1:1238785/1‑91 (MQ=255)

                                                     tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                       <  1:2440066/91‑1 (MQ=255)

                                                     tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                       <  1:2366266/91‑1 (MQ=255)

                                                     tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                       <  1:3382032/91‑1 (MQ=255)

                                                     tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                       <  1:2168309/91‑1 (MQ=255)

                                                       tttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttatta                                     >  1:1796406/1‑91 (MQ=255)

                                                        ttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTtattat                                    <  1:634075/91‑1 (MQ=255)

                                                            tACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTaa                                >  1:955259/1‑91 (MQ=255)

                                                              ccAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTaaaa                              >  1:2558947/1‑91 (MQ=255)

                                                               cAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAt                             <  1:2164239/91‑1 (MQ=255)

                                                               cAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAt                             <  1:2051598/91‑1 (MQ=255)

                                                               cAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAt                             <  1:2051095/91‑1 (MQ=255)

                                                                aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                            <  1:3886554/91‑1 (MQ=255)

                                                                aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                            >  1:3259016/1‑91 (MQ=255)

                                                                aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                            >  1:3259289/1‑91 (MQ=255)

                                                                aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                            >  1:3259353/1‑91 (MQ=255)

                                                                 aCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTa                           >  1:346620/1‑91 (MQ=255)

                                                                 aCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTa                           <  1:453266/91‑1 (MQ=255)

                                                                 aCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTa                           >  1:1367761/1‑91 (MQ=255)

                                                                  cTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTaa                          >  1:1963454/1‑91 (MQ=255)

                                                                  cTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTaa                          >  1:1997898/1‑91 (MQ=255)

                                                                   tttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAAc                         >  1:506527/1‑91 (MQ=255)

                                                                    ttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACg                        <  1:3258010/91‑1 (MQ=255)

                                                                    ttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACg                        >  1:2914927/1‑91 (MQ=255)

                                                                      aTCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCt                      <  1:3589589/91‑1 (MQ=255)

                                                                       tCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCtt                     <  1:1197515/91‑1 (MQ=255)

                                                                       tCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCtt                     <  1:482845/91‑1 (MQ=255)

                                                                        ccAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCttt                    >  1:3632330/1‑91 (MQ=255)

                                                                        ccAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCttt                    >  1:3632289/1‑91 (MQ=255)

                                                                        ccAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCttt                    >  1:181795/1‑91 (MQ=255)

                                                                           aaaTCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTAc                 <  1:2786902/91‑1 (MQ=255)

                                                                               caatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGtt             <  1:3382340/91‑1 (MQ=255)

                                                                               caatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGtt             <  1:1882384/91‑1 (MQ=255)

                                                                                aatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGttt            <  1:961201/91‑1 (MQ=255)

                                                                                aatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGttt            <  1:3952266/91‑1 (MQ=255)

                                                                                 atcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGtttt           <  1:2656047/91‑1 (MQ=255)

                                                                                  tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa          <  1:224965/91‑1 (MQ=255)

                                                                                  tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa          >  1:898518/1‑91 (MQ=255)

                                                                                  tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa          >  1:2622385/1‑91 (MQ=255)

                                                                                  tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa          <  1:3333497/91‑1 (MQ=255)

                                                                                  tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa          >  1:3112690/1‑91 (MQ=255)

                                                                                  tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa          >  1:3116486/1‑91 (MQ=255)

                                                                                   cTTGCAACTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatgga         <  1:1987273‑M2/91‑59 (MQ=255)

                                                                                   cTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTaa         <  1:3244197/91‑1 (MQ=255)

                                                                                   cTTGCAACTAGTTCACCTTCTCGTCCAGCACCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTaa         >  1:1445982/1‑91 (MQ=255)

                                                                                      gCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAAtt      >  1:1526991/1‑91 (MQ=255)

                                                                                       cAACagatgctggacgagaaggtgaactagttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattag     >  1:919241‑M1/1‑4 (MQ=255)

                                                                                        aaCTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagc    <  1:2263030‑M2/91‑64 (MQ=255)

                                                                                        aaCTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagc    <  1:2261097‑M2/91‑64 (MQ=255)

                                                                                        aaCTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagc    <  1:2260846‑M2/91‑64 (MQ=255)

                                                                                         aCTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGtt   >  1:812381/1‑91 (MQ=255)

                                                                                         aCTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGtt   >  1:2840139/1‑91 (MQ=255)

                                                                                          cagatgctggacgagaaggtgaactagttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagctc  <  1:766067‑M1/91‑91 (MQ=255)

                                                                                          cagatgctggacgagaaggtgaactagttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagctc  >  1:394134‑M1/1‑1 (MQ=255)

                                                                                          cTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagctc  <  1:2537611‑M2/91‑66 (MQ=255)

CTTGTTGAATAGCTTTTTTAGTAACTGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTT  >  USA300TCH1516_ALE/2375600‑2375780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.