BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2375690	104 (1.060)	7 (0.080)	5/146	NT	6.7%	coding (334/2136 nt)	topB	DNA topoisomerase 3
*	?	USA300TCH1516_ALE	= 2375715	101 (1.130)	7 (0.080)	5/146	NT	6.7%	coding (309/2136 nt)	topB	DNA topoisomerase 3

Only 100 of 124 total aligned reads displayed.

TGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATAACAACAGT  >  USA300TCH1516_ALE/2375625‑2375804

tGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCt                                                                                           <  1:1894000/91‑1 (MQ=255)

 gAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTg                                                                                          >  1:394134‑M2/1‑90 (MQ=255)

 gAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTg                                                                                          <  1:766067‑M2/91‑2 (MQ=255)

       aTCCATAATCGACGGATTGGCTTTTTGTTACCAACTTCATCCAAAAGCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTgttgcaa                                                                                    <  1:3304268‑M2/91‑8 (MQ=255)

        tCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaat                                                                                   <  1:2249412/91‑1 (MQ=255)

          cATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaataa                                                                                 >  1:1534007/1‑91 (MQ=255)

           aTAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaataat                                                                                <  1:2134009/91‑1 (MQ=255)

            tAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaataata                                                                               >  1:3107759/1‑91 (MQ=255)

              aTCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCaataataat                                                                             >  1:1681117/1‑91 (MQ=255)

               tCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAataataata                                                                            >  1:269301/1‑91 (MQ=255)

               tCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAataataata                                                                            >  1:270576/1‑91 (MQ=255)

                 gACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATc                                                                          <  1:1056845/91‑1 (MQ=255)

                    ggATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCttt                                                                       <  1:3384350/91‑1 (MQ=255)

                    ggATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCttt                                                                       <  1:3384040/91‑1 (MQ=255)

                       ttGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCAc                                                                    <  1:2013514/91‑1 (MQ=255)

                       ttGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCAc                                                                    <  1:4076842/91‑1 (MQ=255)

                        tGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACt                                                                   >  1:1238785/1‑91 (MQ=255)

                        tGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACt                                                                   >  1:4038228/1‑91 (MQ=255)

                            tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                                               <  1:3382032/91‑1 (MQ=255)

                            tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                                               <  1:2440066/91‑1 (MQ=255)

                            tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                                               <  1:2366266/91‑1 (MQ=255)

                            tttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttat                                                               <  1:2168309/91‑1 (MQ=255)

                             ttttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttatt                                                              <  1:1861830/91‑1 (MQ=255)

                              tttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTttatta                                                             >  1:1796406/1‑91 (MQ=255)

                               ttGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTtattat                                                            <  1:634075/91‑1 (MQ=255)

                                   tACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTaa                                                        >  1:955156/1‑91 (MQ=255)

                                   tACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTaa                                                        >  1:955259/1‑91 (MQ=255)

                                     ccAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTaaaa                                                      >  1:2558947/1‑91 (MQ=255)

                                      cAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAt                                                     <  1:2164239/91‑1 (MQ=255)

                                      cAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAt                                                     <  1:2051095/91‑1 (MQ=255)

                                      cAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAt                                                     <  1:648908/91‑1 (MQ=255)

                                       aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                                                    >  1:3259016/1‑91 (MQ=255)

                                       aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                                                    <  1:3886554/91‑1 (MQ=255)

                                       aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                                                    >  1:3259164/1‑91 (MQ=255)

                                       aaCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAAtt                                                    >  1:3259289/1‑91 (MQ=255)

                                        aCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTa                                                   <  1:453266/91‑1 (MQ=255)

                                        aCTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTa                                                   >  1:346620/1‑91 (MQ=255)

                                         cTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTaa                                                  >  1:1997898/1‑91 (MQ=255)

                                         cTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTaa                                                  >  1:1963454/1‑91 (MQ=255)

                                         cTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTaa                                                  <  1:2755349/91‑1 (MQ=255)

                                          tttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAAc                                                 >  1:506488/1‑91 (MQ=255)

                                          tttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAAc                                                 >  1:506527/1‑91 (MQ=255)

                                           ttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACg                                                <  1:3258010/91‑1 (MQ=255)

                                           ttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACg                                                >  1:2914927/1‑91 (MQ=255)

                                           ttATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACg                                                <  1:572396/91‑1 (MQ=255)

                                             aTCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCt                                              <  1:3589589/91‑1 (MQ=255)

                                             aTCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCt                                              >  1:1409239/1‑91 (MQ=255)

                                              tCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCtt                                             <  1:482845/91‑1 (MQ=255)

                                              tCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCtt                                             <  1:1197515/91‑1 (MQ=255)

                                               ccAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCttt                                            >  1:3632289/1‑91 (MQ=255)

                                               ccAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCttt                                            >  1:3632330/1‑91 (MQ=255)

                                                  aaaTCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTAc                                         <  1:2786902/91‑1 (MQ=255)

                                                     tcaatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGt                                      >  1:3660622/1‑91 (MQ=255)

                                                      caatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGtt                                     <  1:1882384/91‑1 (MQ=255)

                                                       aatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGttt                                    <  1:3952266/91‑1 (MQ=255)

                                                       aatcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGttt                                    <  1:961201/91‑1 (MQ=255)

                                                        atcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGtttt                                   <  1:2911115/91‑1 (MQ=255)

                                                        atcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGtttt                                   >  1:895197/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  >  1:3116486/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  >  1:3112690/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  <  1:3333497/91‑1 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  >  1:1224738/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  >  1:2672007/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  >  1:2622385/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  >  1:898518/1‑91 (MQ=255)

                                                         tcTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTa                                  <  1:224965/91‑1 (MQ=255)

                                                          cTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTaa                                 >  1:3353957/1‑91 (MQ=255)

                                                          cTTGCAACTAGTTCACCTTCTCGTCCAGCACCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTaa                                 >  1:1445982/1‑91 (MQ=255)

                                                            tGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAAt                               <  1:3193260/91‑1 (MQ=255)

                                                               aaCTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagc                            <  1:2260846‑M2/91‑64 (MQ=255)

                                                               aaCTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagc                            <  1:2261097‑M2/91‑64 (MQ=255)

                                                                aCTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagct                           <  1:1999318‑M2/91‑65 (MQ=255)

                                                                aCTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGtt                           >  1:2840139/1‑91 (MQ=255)

                                                                aCTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGtt                           >  1:812381/1‑91 (MQ=255)

                                                                 cTAGTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagctc                          <  1:2537611‑M2/91‑66 (MQ=255)

                                                                 cTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGttt                          >  1:2572048/1‑91 (MQ=255)

                                                                   aGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGc                        <  1:2116719/91‑1 (MQ=255)

                                                                    gTTCACCTTCTCGTCCAGCATCTgttgcaagattgattttggataaagttggtaacaaaaagccaatccgtcgattatggattagctcagt                       <  1:3706483‑M2/91‑69 (MQ=255)

                                                                    gTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCt                       <  1:432172/91‑1 (MQ=255)

                                                                     ttCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCtt                      <  1:3656389/91‑1 (MQ=255)

                                                                      tCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTg                     <  1:1088243/91‑1 (MQ=255)

                                                                       cACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGt                    >  1:2456142/1‑91 (MQ=255)

                                                                       cACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGt                    >  1:36648/1‑91 (MQ=255)

                                                                        aCCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGtt                   >  1:4055757/1‑91 (MQ=255)

                                                                         ccTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGttt                  >  1:1376737/1‑91 (MQ=255)

                                                                          cTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGtttt                 <  1:3843378/91‑1 (MQ=255)

                                                                            tctcGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTAc               <  1:3205344/91‑1 (MQ=255)

                                                                              tcGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCa             >  1:948245/1‑91 (MQ=255)

                                                                                   cAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaac        <  1:1551497/91‑1 (MQ=255)

                                                                                   cAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaac        <  1:570417/91‑1 (MQ=255)

                                                                                   cAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaac        <  1:1551351/91‑1 (MQ=255)

                                                                                   cAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaac        <  1:1551350/91‑1 (MQ=255)

                                                                                   cAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaac        <  1:1407697/91‑1 (MQ=255)

                                                                                   cAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTGACCAAAaac        >  1:3728159/1‑91 (MQ=255)

                                                                                    aGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaaca       <  1:3631445/91‑1 (MQ=255)

                                                                                    aGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaaca       <  1:3627810/91‑1 (MQ=255)

                                                                                     gCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaacaa      <  1:1575146/91‑1 (MQ=255)

                                                                                     gCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATaacaa      <  1:1575134/91‑1 (MQ=255)

                                                                                      cATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAGTaacaac     >  1:2065167/1‑91 (MQ=255)

                                                                                         cTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATAACAACAGt  >  1:25042/1‑91 (MQ=255)

TGAGCTAATCCATAATCGACGGATTGGCTTTTTGTTACCAACTTTATCCAAAATCAATCTTGCAACTAGTTCACCTTCTCGTCCAGCATCTGTTGCAATAATAATATCTTTCACTTTATTATCTAAAATTAACGCTTTTACTGTTTTAAATTGTTTGCTTGTTTTACCAATAACAACAGT  >  USA300TCH1516_ALE/2375625‑2375804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.