| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2378458 = | 84 (0.850) | 14 (0.150) | 8/152 | NT | 14.5% | intergenic (+317/+102) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein |
| ? | USA300TCH1516_ALE | 2378519 = | 85 (0.910) | intergenic (+378/+41) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein | |||||
TTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2378551‑2378458‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATG > USA300TCH1516_ALE/2378519‑2378608 TTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTA > 1:1506984/1‑91TTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTA > 1:3523376/1‑91TTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTA > 1:3521254/1‑91 TTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTAT > 1:1997015/1‑91 TTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTAT < 1:3080406/91‑1 GAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAACAGGGGGCTTTTATTTTCTACGAATACTAACATGGATTTTATTT > 1:4154379/1‑91 AATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCA > 1:2345335/1‑91 GAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAT > 1:1506481/1‑91 GAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAT > 1:1506228/1‑91 AGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATG > 1:2388679/1‑91 GAGCCCCCTTTACCACAATATGTAAATGTATATTGTGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGT > 1:3486635/1‑91 TTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAG > 1:2491308/1‑91 TTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAG > 1:2678713/1‑91 CCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACA > 1:2800818/1‑91 CCACAATATGTAAATGTATATTGTGAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACA > 1:3471349/1‑91 CCACAATATGTAAATGTATATTGTGAAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACA > 1:676190/1‑91 CACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAA > 1:2379501/1‑91 CACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAA > 1:2379457/1‑91 CACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAA > 1:1904263/1‑91 ATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATA > 1:2959223/1‑91 ATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATA < 1:3816062/91‑1 TTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAAT > 1:4122759/1‑91 TTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAAT > 1:541673/1‑91 TTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATG < 1:2395659/91‑1 TTTGAAAATAAAATCCATTTTAGTATTCGTAGAAAATGAGAGCCCCCTTTACCACAATATGTAAATGTATATTGTGAAAAGGGGGCTTTTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2378551‑2378458‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATG > USA300TCH1516_ALE/2378519‑2378608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |