| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2378458 = | 84 (0.850) | 14 (0.150) | 8/152 | NT | 14.5% | intergenic (+317/+102) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein |
| ? | USA300TCH1516_ALE | 2378519 = | 85 (0.910) | intergenic (+378/+41) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein | |||||
Only 100 of 119 total aligned reads displayed.
GAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATGA > USA300TCH1516_ALE/2378430‑2378609 | gAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTc > 1:967443/1‑91 (MQ=255)aaataaaatccatgttagtattcgtagaAAATAAAAGCCCCCTGTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTc > 1:4154379‑M1/29‑91 (MQ=255) aTGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTa > 1:1546586/1‑91 (MQ=255) gTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACg > 1:235045/1‑91 (MQ=255) gTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACg > 1:234713/1‑91 (MQ=255) tATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGa < 1:1265285/91‑1 (MQ=255) tATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGa < 1:1123261/91‑1 (MQ=255) tGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt > 1:1436560/1‑91 (MQ=255) aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc > 1:214853/1‑91 (MQ=255) aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc > 1:3203001/1‑91 (MQ=255) gTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACt < 1:1293704/91‑1 (MQ=255) gTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACt < 1:2417642/91‑1 (MQ=255) aacaacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTaaaa > 1:730008/1‑91 (MQ=255) acaacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAAt > 1:21975/1‑91 (MQ=255) caacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATg > 1:3474829/1‑91 (MQ=255) caacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATg < 1:320452/91‑1 (MQ=255) aacTATGTCATAAATAAAAGCCCCCTTTTGACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATgg < 1:3326459/91‑1 (MQ=255) aacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATAGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATgg < 1:3591402/91‑1 (MQ=255) aTGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattt > 1:783529/1‑91 (MQ=255) gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta < 1:2276490/91‑1 (MQ=255) gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta < 1:1652478/91‑1 (MQ=255) gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta < 1:1633536/91‑1 (MQ=255) tCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttat < 1:3039830/91‑1 (MQ=255) cATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttatt < 1:2961643/91‑1 (MQ=255) cATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttatt < 1:1999454/91‑1 (MQ=255) gaaaatgagagccccctttaccacaatatgtaaatgtatattgtgaacagggggcttttatttTCTACGAATACTAACATGGattttattt > 1:4154379‑M2/64‑91 (MQ=255) aatgagagccccctttaccacaatatgtaaatgtatattgtgaaaagggggcttttatttTCTACGAATACTAAAATGGATTTTATTTTCa > 1:2345335‑M2/61‑91 (MQ=255) ATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCaa < 1:3080406‑M1/91‑1 (MQ=255) TAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCaaa > 1:1506984‑M1/1‑91 (MQ=255) TAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCaaa > 1:3521254‑M1/1‑91 (MQ=255) TAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCaaa > 1:3523376‑M1/1‑91 (MQ=255) gagagccccctttaccacaatatgtaaatgtatattgtgaaaagggggcttttatttTCTACGAATACTAAAATGGATTTTATTTTCAAAt > 1:1506228‑M2/58‑91 (MQ=255) aaaaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAt < 1:1736984/91‑1 (MQ=255) agagccccctttaccacaatatgtaaatgtatattgtgaaaagggggctctcatttTCTACGAATACTAAAATGGATTTTATTTTCAAAtg > 1:2388679‑M2/57‑91 (MQ=255) aaaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtg < 1:24234/91‑1 (MQ=255) aaaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtg > 1:3085077/1‑91 (MQ=255) aaaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATATTATTTTCAAAtg > 1:4149478/1‑91 (MQ=255) aaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgt > 1:2590582/1‑91 (MQ=255) aGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgtg < 1:627804/91‑1 (MQ=255) aGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgtg > 1:2266237/1‑91 (MQ=255) aGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgtg < 1:2713723/91‑1 (MQ=255) aGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgtg < 1:1048145/91‑1 (MQ=255) cccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa > 1:2909558/1‑91 (MQ=255) cccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa > 1:1989765/1‑91 (MQ=255) cccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa > 1:1990121/1‑91 (MQ=255) cccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa > 1:3219626/1‑91 (MQ=255) cccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa < 1:1395645/91‑1 (MQ=255) cccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa > 1:1375595/1‑91 (MQ=255) ccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATATTAAAATGGATTTTATTTTCAAATGTGTaa > 1:1183513/1‑91 (MQ=255) ccccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAACTGGATTTTATTTTCAAATGTGTaa < 1:638470/91‑1 (MQ=255) cccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTaaa > 1:1837000/1‑91 (MQ=255) ccTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAAc < 1:1003885/91‑1 (MQ=255) cTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACt > 1:2560745/1‑91 (MQ=255) cTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACt > 1:2560746/1‑91 (MQ=255) ttttCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTa > 1:3985634/1‑91 (MQ=255) tttCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAg < 1:3635338/91‑1 (MQ=255) ttaccacaatatgtaaatgtatattgtgaaaagggggctctcatttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAg > 1:2678713‑M2/47‑91 (MQ=255) ttaccacaatatgtaaatgtatattgtgaaaagggggctctcatttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAg > 1:2491308‑M2/47‑91 (MQ=255) ccacaatatgtaaatgtatattgtgaaaagggggcttttatttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa > 1:2800818‑M2/44‑91 (MQ=255) ccacaatatgtaaatgtatattgtgaaaagggggctctcatttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa > 1:3471349‑M2/44‑91 (MQ=255) cacaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa > 1:66660/1‑91 (MQ=255) cacaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa > 1:506068/1‑91 (MQ=255) cacaATATACATTTACATAGTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa < 1:85462/91‑1 (MQ=255) cacaatatgtaaatgtatattgtgaaaagggggcttttatttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACaa > 1:1904263‑M2/43‑91 (MQ=255) cacaatatgtaaatgtatattgtgaaaagggggcttttatttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACaa > 1:2379501‑M2/43‑91 (MQ=255) acaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACaa < 1:1147745/91‑1 (MQ=255) acaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACaa < 1:2910020/91‑1 (MQ=255) aaTATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTGAACTAGACAAac < 1:3200881/91‑1 (MQ=255) aaTATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGAATTTTATTTTCAAATGTGTAAACTAGACAAac > 1:3532712/1‑91 (MQ=255) atatACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAaca > 1:1420940/1‑91 (MQ=255) aCATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGc < 1:758850/91‑1 (MQ=255) tttACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTg < 1:2777721/91‑1 (MQ=255) tttACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTg < 1:2777926/91‑1 (MQ=255) tttACATATGGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTg < 1:3967210/91‑1 (MQ=255) cATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATac > 1:709002/1‑91 (MQ=255) atatTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATaca > 1:3631933/1‑91 (MQ=255) atatTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATaca < 1:1033530/91‑1 (MQ=255) ttGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGt < 1:829882/91‑1 (MQ=255) tgtgGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTa > 1:610079/1‑91 (MQ=255) gtgGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTAc > 1:3235915/1‑91 (MQ=255) gtgGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTAc > 1:1456314/1‑91 (MQ=255) gtgGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTAc > 1:1563896/1‑91 (MQ=255) gtgGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTAc > 1:674900/1‑91 (MQ=255) tAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACaaaa < 1:2595601/91‑1 (MQ=255) tAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACaaaa > 1:685795/1‑91 (MQ=255) gggggCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAaataat > 1:533388/1‑91 (MQ=255) ggggCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATg < 1:1836918/91‑1 (MQ=255) ggggCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATg > 1:967167/1‑91 (MQ=255) gggCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGa < 1:2527027/91‑1 (MQ=255) ggCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGAt < 1:3778176/91‑1 (MQ=255) gCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATa > 1:2172679/1‑91 (MQ=255) ctctCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATAc > 1:1329021/1‑91 (MQ=255) ctctCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATAc > 1:1328721/1‑91 (MQ=255) tcATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACtaa > 1:287724/1‑91 (MQ=255) cATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACtaat > 1:2138070/1‑91 (MQ=255) atttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACtaata < 1:3816062‑M2/87‑1 (MQ=255) atttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACtaata > 1:2959223‑M2/5‑91 (MQ=255) ttTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTaataat > 1:541673‑M2/3‑91 (MQ=255) tTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATg < 1:2395659‑M2/90‑1 (MQ=255) tCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATGa < 1:92683/91‑1 (MQ=255) | GAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTAATAATGA > USA300TCH1516_ALE/2378430‑2378609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |