| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2378458 = | 84 (0.850) | 14 (0.150) | 8/152 | NT | 14.5% | intergenic (+317/+102) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein |
| ? | USA300TCH1516_ALE | 2378519 = | 85 (0.910) | intergenic (+378/+41) | glcU_2/USA300HOU_RS12220 | putative glucose uptake protein GlcU/hypothetical protein | |||||
Only 100 of 114 total aligned reads displayed.
ATATCAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATT > USA300TCH1516_ALE/2378368‑2378545 | cattattagtatcattattttgtacgtgtatcaggcagtgtttgtctagtttacacatttgaaaataaaatccattttagtattcgtagaa < 1:2395659‑M1/1‑1 (MQ=255)atatCAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCata > 1:2155608/1‑91 (MQ=255) attattagtatcattattttgtacgtgtatcaggcagtgtttgtctagtttacacatttgaaaataaaatccattttagtattcgtagaaa > 1:541673‑M1/90‑91 (MQ=255) attattagtatcattattttgtacgtgtatcaggcagtgtttgtctagtttacacatttgaaaataaaatccattttagtattcgtagaaa > 1:4122759‑M1/90‑91 (MQ=255) atCAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCCTTATCAACTTGAATGTATGAGTTGAACAACTATGTCataaa < 1:3601103/91‑1 (MQ=255) tCAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCataaat < 1:2594652/91‑1 (MQ=255) cAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCataaata < 1:864784/91‑1 (MQ=255) cAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTAGCAACTTGAATGTACGAGTTGAACAACTATGTCataaata > 1:3851319/1‑91 (MQ=255) gTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATaaaa > 1:1288957/1‑91 (MQ=255) tATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAg < 1:3003973/91‑1 (MQ=255) tATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAg < 1:1549148/91‑1 (MQ=255) aTGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGc < 1:3284396/91‑1 (MQ=255) tGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGcc < 1:3830534/91‑1 (MQ=255) gcgcCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGccc > 1:1902769/1‑91 (MQ=255) gcCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGccccc < 1:1127893/91‑1 (MQ=255) ccATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCt > 1:2392545/1‑91 (MQ=255) cataTGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTca > 1:2452380/1‑91 (MQ=255) atGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACaa > 1:1920085/1‑91 (MQ=255) gAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAata < 1:1104441/91‑1 (MQ=255) aaGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAatat > 1:121195/1‑91 (MQ=255) aaGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAatat > 1:115278/1‑91 (MQ=255) gTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATAc > 1:577209/1‑91 (MQ=255) ggATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACAt > 1:2268397/1‑91 (MQ=255) gATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACAtt > 1:1268526/1‑91 (MQ=255) gATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACAtt > 1:1268424/1‑91 (MQ=255) tAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTa < 1:444910/91‑1 (MQ=255) tAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTa < 1:1167115/91‑1 (MQ=255) aGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTAc > 1:618073/1‑91 (MQ=255) aGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTAc < 1:1792831/91‑1 (MQ=255) gCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACa > 1:2013802/1‑91 (MQ=255) cTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACat > 1:2856357/1‑91 (MQ=255) cATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATAtt < 1:2737931/91‑1 (MQ=255) aTAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtg > 1:3662132/1‑91 (MQ=255) tAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtgt > 1:2964881/1‑91 (MQ=255) tAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtgt < 1:707526/91‑1 (MQ=255) tAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtgt < 1:3563954/91‑1 (MQ=255) ttgtctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtgtg > 1:1904263‑M1/50‑91 (MQ=255) ttgtctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtgtg > 1:2379457‑M1/50‑91 (MQ=255) ttgtctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATAAAAGCCCCCTTTTCACAATATACATTTACATATtgtg > 1:2379501‑M1/50‑91 (MQ=255) tgtctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATGAGAGCCCCCTTTTCACAATATACATTTACATATTGTgg > 1:3471349‑M1/49‑91 (MQ=255) tgtctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATGAGAGCCCCCTTTTCACAATATACATTTACATATTGTgg > 1:676190‑M1/49‑91 (MQ=255) tgtctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTgg > 1:2800818‑M1/49‑91 (MQ=255) aCGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTgg < 1:2450555/91‑1 (MQ=255) gCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTa > 1:857616/1‑91 (MQ=255) gCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTa > 1:3386939/1‑91 (MQ=255) ctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATGAGAGCCCCCTTTTCACAATATACATTTACATATTGTGGTaa > 1:2678713‑M1/46‑91 (MQ=255) ctagtttacacatttgaaaataaaatccattttagtattcgtagaAAATGAGAGCCCCCTTTTCACAATATACATTTACATATTGTGGTaa > 1:2491308‑M1/46‑91 (MQ=255) cACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTaa > 1:2295504/1‑91 (MQ=255) cACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTaa < 1:3601024/91‑1 (MQ=255) cACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTaa < 1:3600990/91‑1 (MQ=255) cTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAg < 1:1534165/91‑1 (MQ=255) ttATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGc > 1:3000604/1‑91 (MQ=255) tATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGct < 1:1042137/91‑1 (MQ=255) acatttgaaaataaaatccattttagtattcgtagaAAATGAGAGCCCCCTTTACACAATATACATTTACATATTGTGGTAAAGGGGGctc > 1:3486635‑M1/37‑91 (MQ=255) aTCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctc > 1:108880/1‑91 (MQ=255) tCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct < 1:2943917/91‑1 (MQ=255) tCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct < 1:2722291/91‑1 (MQ=255) cAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCtctc < 1:2676121/91‑1 (MQ=255) cAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCtctc < 1:815317/91‑1 (MQ=255) atttgaaaataaaatccattttagtattcgtagaAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCtctc > 1:1506481‑M1/35‑91 (MQ=255) aaCTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTAAATATTGTGGTAAAGGGGGCTCTCa < 1:1614295/91‑1 (MQ=255) aCTTGAATGTATGAGTTGAACAACTGTGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAt < 1:3870201/91‑1 (MQ=255) aCTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAt > 1:961779/1‑91 (MQ=255) aCTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAt > 1:124067/1‑91 (MQ=255) tgaaaataaaatccattttagtattcgtagaAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt > 1:2345335‑M1/32‑91 (MQ=255) cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt < 1:488896/91‑1 (MQ=255) cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt < 1:3826921/91‑1 (MQ=255) cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt < 1:3698482/91‑1 (MQ=255) cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt < 1:1906837/91‑1 (MQ=255) cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt < 1:1906812/91‑1 (MQ=255) cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt < 1:1906284/91‑1 (MQ=255) ttGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAttt < 1:903759/91‑1 (MQ=255) ttGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAttt < 1:1711409/91‑1 (MQ=255) ttGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAttt < 1:246158/91‑1 (MQ=255) ttGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAttt < 1:3758779/91‑1 (MQ=255) gAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAttttt > 1:542768/1‑90 (MQ=255) aaataaaatccatgttagtattcgtagaAAATAAAAGCCCCCTGTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTc > 1:4154379‑M1/29‑91 (MQ=255) aTGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTa > 1:1546586/1‑91 (MQ=255) gTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACg > 1:235045/1‑91 (MQ=255) gTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACg > 1:234713/1‑91 (MQ=255) tATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGa < 1:1265285/91‑1 (MQ=255) tATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGa < 1:1123261/91‑1 (MQ=255) tGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt > 1:1436560/1‑91 (MQ=255) aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc > 1:3203001/1‑91 (MQ=255) aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc > 1:214853/1‑91 (MQ=255) gTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACt < 1:1293704/91‑1 (MQ=255) gTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACt < 1:2417642/91‑1 (MQ=255) acaacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAAt > 1:21975/1‑91 (MQ=255) caacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATg < 1:320452/91‑1 (MQ=255) caacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATg > 1:3474829/1‑91 (MQ=255) aacTATGTCATAAATAAAAGCCCCCTTTTGACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATgg < 1:3326459/91‑1 (MQ=255) aacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATAGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATgg < 1:3591402/91‑1 (MQ=255) tATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatt > 1:82445/1‑91 (MQ=255) aTGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattt > 1:783529/1‑91 (MQ=255) gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta < 1:1633536/91‑1 (MQ=255) gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta < 1:1652478/91‑1 (MQ=255) gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta < 1:2276490/91‑1 (MQ=255) tCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttat < 1:3039830/91‑1 (MQ=255) cATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttatt < 1:1999454/91‑1 (MQ=255) cATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttatt < 1:2961643/91‑1 (MQ=255) | ATATCAAGTATGCGCCATACATATGAAGTGGATAGCTGCATAACGCACTGCATTATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATT > USA300TCH1516_ALE/2378368‑2378545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |