| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2399023 = | 88 (0.890) | 14 (0.170) | 12/134 | NT | 19.0% | intergenic (+97/+75) | fdhD/USA300HOU_RS12350 | Sulfurtransferase FdhD/hypothetical protein |
| ? | USA300TCH1516_ALE | 2399070 = | 46 (0.560) | intergenic (+144/+28) | fdhD/USA300HOU_RS12350 | Sulfurtransferase FdhD/hypothetical protein | |||||
AATATTAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2399125‑2399023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTG > USA300TCH1516_ALE/2399070‑2399157 AATATTAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAAC < 1:1396091/91‑1 ATTAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTA > 1:3788473/1‑91 TTAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTAC < 1:2319724/91‑1 TAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACT < 1:2770873/91‑1 TAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACT < 1:2030743/91‑1 AAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGTTGATTTCTACTCGAAACCAGCTTACTG < 1:1158317/91‑1 AAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTG > 1:3976268/1‑91 AAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTG > 1:1680671/1‑91 AAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTG < 1:2673361/91‑1 AAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTG > 1:2629323/1‑91 AAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGC < 1:2786785/91‑1 AAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGC < 1:2786660/91‑1 AAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCT > 1:996417/1‑91 AAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCT > 1:3918576/1‑91 AGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTT > 1:3907623/1‑91 GAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTT < 1:1041502/91‑1 AAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTT < 1:2770058/91‑1 AGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTT < 1:2519296/91‑1 AGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTT < 1:2112509/91‑1 TAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAT > 1:3751221/1‑91 TAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATAT > 1:3751626/1‑91 AAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATC > 1:3381048/1‑91 AAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTT > 1:2321619/1‑91 AAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCT > 1:1385752/1‑91 GCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTT > 1:481747/1‑91 AGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTA > 1:2790117/1‑91 TAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAAT > 1:831169/1‑91 TAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAAT > 1:525794/1‑91 TAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAAT > 1:3526385/1‑91 AAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATA > 1:1411414/1‑91 AGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATAT > 1:1319028/1‑91 TGGTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTG > 1:3790320/1‑91 GTTTCGAGTAGAAATCAACTTACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGAT > 1:4088911/1‑91 TACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACA > 1:1317814/1‑91 TACTGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACA < 1:3094657/91‑1 TGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAA < 1:322803/91‑1 TGCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAA < 1:1836773/91‑1 GCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAAC < 1:3069851/91‑1 GCTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAAC < 1:931551/91‑1 CTTTTTTATTCTAATACAAACCTATCATCAATCGTTAATTGCCAATATCTTCTTTTAATATTTGATAACAAAGCGATTGATAGACATAACC < 1:180173/91‑1 TTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTT < 1:2216628/91‑1 TTTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTT < 1:542755/91‑1 TTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTG > 1:567642/1‑91 TTTTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTG > 1:567644/1‑91 AATATTAAAAGAAGATATTGGAAATTAACGATTGATGATAGGTTTGTATTAGAATAAAAAAGCAGTAAGCTGGTTTCGAGTAGAAATCAACTTACTGCTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2399125‑2399023‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttactgctttttTATTCTAATACAAACCTATCATCAATCGTTAATTTCCAATATCTTCTTTTAATATTTGATAACAAAACGATTGATAGACATAACCTTG > USA300TCH1516_ALE/2399070‑2399157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |