| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2429428 = | 84 (0.850) | 5 (0.050) | 5/152 | NT | 5.4% | coding (219/948 nt) | lytR_2 | Transcriptional regulator LytR |
| ? | USA300TCH1516_ALE | 2429460 = | 94 (1.010) | coding (187/948 nt) | lytR_2 | Transcriptional regulator LytR | |||||
TAATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2429521‑2429428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTACA > USA300TCH1516_ALE/2429460‑2429548 TAATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCT < 1:3318027/91‑1 AATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTT > 1:545834/1‑91 ATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTT < 1:2306827/91‑1 ATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTT > 1:3735778/1‑91 TAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTTA > 1:1101651/1‑91 GTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTG > 1:323602/1‑91 GTTTAAACGATGGTGATCCATTCACAATCGCTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATC > 1:1294745/1‑91 AAACGATGGTGATCCATTCACAATCGCTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTAT > 1:2586158/1‑91 GATGGTGATCCATTCACAATCGCTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACC > 1:3173492/1‑91 ATGGTGATCCATTCACAATCG‑TTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAG > 1:311794/1‑91 tcgaTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAGAAATTTTAGCAG < 1:3209283/87‑1 TTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTA < 1:3773866/91‑1 TTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTAC < 1:3616665/91‑1 TAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTACA > 1:2969417/1‑91 TAATAAGATACACAATCCGTTAGATCGCAATCATTCAGAATTAAGAGATAAAAAAGTGAGTTTAAACGATGGTGATCCATTCACAATCGCTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2429521‑2429428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTACA > USA300TCH1516_ALE/2429460‑2429548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |