BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2429428 =	84 (0.850)	5 (0.050)	5/152	NT	5.4%	coding (219/948 nt)	lytR_2	Transcriptional regulator LytR
*	?	USA300TCH1516_ALE	2429460 =	94 (1.010)	5 (0.050)	5/152	NT	5.4%	coding (187/948 nt)	lytR_2	Transcriptional regulator LytR

Only 100 of 111 total aligned reads displayed.

CGTTTTAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTA  >  USA300TCH1516_ALE/2429338‑2429518

cGTTTTAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTCCGATCAGCATCTGAATCGACACCAAAt                                                                                            >  1:2983075/1‑91 (MQ=255)

cGTTTTAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAAt                                                                                            >  1:2130977/1‑91 (MQ=255)

 tgtagctgctaaaatttttattactggtaataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTa                                                                                           >  1:2969417‑M1/90‑91 (MQ=255)

 gTTTTAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATa                                                                                           >  1:2140060/1‑91 (MQ=255)

  ttttAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATaa                                                                                          >  1:3635436/1‑91 (MQ=255)

  ttttAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATaa                                                                                          >  1:2550645/1‑91 (MQ=255)

  ttttAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATaa                                                                                          <  1:4118250/91‑1 (MQ=255)

  gtagctgctaaaatttttattactggtaataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTaa                                                                                          <  1:3616665‑M1/3‑1 (MQ=255)

   tagctgctaaaatttttattactggtaataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTaaa                                                                                         <  1:3773866‑M1/4‑1 (MQ=255)

      ctgctaaaatttctattactggtaataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagtttaatcga                                                                                      <  1:3209283‑M1/7‑5 (MQ=255)

      aGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCg                                                                                      <  1:2119487/91‑1 (MQ=255)

       gggTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGa                                                                                     >  1:251635/1‑91 (MQ=255)

        ggTTGATAGATAAAATCATAATACTATCACTCCGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGAt                                                                                    >  1:3683249/1‑91 (MQ=255)

        ggTTGATAGATAAAATCATAATACTATCACTCCGCTCTCCGCCACCCTTTTTCTTACAATCAGCATCTGAATCGACACCAAATAAAGCGAt                                                                                    >  1:3683229/1‑91 (MQ=255)

        ggTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGAt                                                                                    >  1:195515/1‑91 (MQ=255)

          ttGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATtg                                                                                  >  1:2916581/1‑91 (MQ=255)

            gatagataAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATtgtg                                                                                >  1:1450436/1‑91 (MQ=255)

             atagataAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGa                                                                               <  1:107560/91‑1 (MQ=255)

                gataAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATg                                                                            >  1:3784919/1‑91 (MQ=255)

                 ataAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATgg                                                                           <  1:1813355/91‑1 (MQ=255)

                    aaaTCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATc                                                                        >  1:511834/1‑91 (MQ=255)

                     aaTCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCa                                                                       >  1:792235/1‑91 (MQ=255)

                     aaTCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCa                                                                       <  1:25393/91‑1 (MQ=255)

                       tCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCAcc                                                                     <  1:3127910/91‑1 (MQ=255)

                        ctggtaataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAA‑CGATTGTGAATGGATCACCAt                                                                   >  1:311794‑M1/67‑91 (MQ=255)

                        cATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAATTAAAGCGATTGTGAATGGATCACCa                                                                    >  1:3869294/1‑91 (MQ=255)

                        cATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCa                                                                    <  1:3933486/91‑1 (MQ=255)

                        cATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCa                                                                    <  1:555122/91‑1 (MQ=255)

                        cATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCa                                                                    <  1:2384429/91‑1 (MQ=255)

                          taataCTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATc                                                                  >  1:3150808/1‑91 (MQ=255)

                          taataCTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATc                                                                  >  1:142989/1‑91 (MQ=255)

                          ggtaataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAAGCGATTGTGAATGGATCACCATc                                                                  >  1:3173492‑M1/65‑91 (MQ=255)

                              ataagatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAAGCGATTGTGAATGGATCACCATCGttt                                                              >  1:2586158‑M1/61‑91 (MQ=255)

                               cTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTa                                                             >  1:1965964/1‑91 (MQ=255)

                                  gatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAAGCGATTGTGAATGGATCACCATCGTTTAAAc                                                          >  1:1294745‑M1/57‑91 (MQ=255)

                                   cACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACt                                                         >  1:4012398/1‑91 (MQ=255)

                                   cACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACt                                                         <  1:1379108/91‑1 (MQ=255)

                                   cACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACt                                                         <  1:1744407/91‑1 (MQ=255)

                                     cTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCa                                                       <  1:887294/91‑1 (MQ=255)

                                      tACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCAc                                                      <  1:2399462/91‑1 (MQ=255)

                                      cacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCAc                                                      >  1:323602‑M1/53‑91 (MQ=255)

                                       aCGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACt                                                     >  1:2269689/1‑91 (MQ=255)

                                         gCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACttt                                                   <  1:861761/91‑1 (MQ=255)

                                                gCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtct                                            <  1:287480/91‑1 (MQ=255)

                                                 ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                           >  1:1284777/1‑91 (MQ=255)

                                                 ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                           <  1:1369207/91‑1 (MQ=255)

                                                 ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                           <  1:1389912/91‑1 (MQ=255)

                                                 ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                           <  1:1392871/91‑1 (MQ=255)

                                                  cACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATctct                                          >  1:2002823/1‑91 (MQ=255)

                                                  cACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATctct                                          <  1:3693460/91‑1 (MQ=255)

                                                   aCCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCtt                                         <  1:899314/91‑1 (MQ=255)

                                                   aCCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCtt                                         >  1:2022480/1‑91 (MQ=255)

                                                        ttttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTTATTc                                    >  1:814376/1‑91 (MQ=255)

                                                        ttttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTc                                    <  1:3095171/91‑1 (MQ=255)

                                                        ttttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTc                                    <  1:358804/91‑1 (MQ=255)

                                                         tttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGGGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCt                                   <  1:3295107/91‑1 (MQ=255)

                                                          ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                  >  1:1863165/1‑91 (MQ=255)

                                                          ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                  >  1:1863592/1‑91 (MQ=255)

                                                          ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                  >  1:1863605/1‑91 (MQ=255)

                                                          ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                  >  1:3953881/1‑91 (MQ=255)

                                                          ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                  >  1:554466/1‑91 (MQ=255)

                                                             ttACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAAt                               <  1:4091383/91‑1 (MQ=255)

                                                               aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                             >  1:4102407/1‑91 (MQ=255)

                                                               aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                             >  1:3608968/1‑91 (MQ=255)

                                                               aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                             >  1:1473185/1‑91 (MQ=255)

                                                               aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                             >  1:4102262/1‑91 (MQ=255)

                                                                 gATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGAtt                           >  1:3386535/1‑91 (MQ=255)

                                                                 gATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGAtt                           >  1:777577/1‑91 (MQ=255)

                                                                     aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGACTGATTGCGa                       >  1:3972633/1‑91 (MQ=255)

                                                                     aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGACTGATTGCGa                       >  1:3972822/1‑91 (MQ=255)

                                                                     aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGACTGATTGCGa                       >  1:3973014/1‑91 (MQ=255)

                                                                     aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGa                       >  1:1014325/1‑91 (MQ=255)

                                                                      gCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGAt                      >  1:3967871/1‑91 (MQ=255)

                                                                       cATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATc                     >  1:1013829/1‑91 (MQ=255)

                                                                       cATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATc                     >  1:1014479/1‑91 (MQ=255)

                                                                       cATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATc                     >  1:2199431/1‑91 (MQ=255)

                                                                         tCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTa                   <  1:1109181/91‑1 (MQ=255)

                                                                         tCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTa                   <  1:2380022/91‑1 (MQ=255)

                                                                         tCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTa                   >  1:2053015/1‑91 (MQ=255)

                                                                          cTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTACACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTaa                  >  1:3098273/1‑91 (MQ=255)

                                                                           tGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAAc                 >  1:658387/1‑91 (MQ=255)

                                                                           tGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAAc                 >  1:1077245/1‑91 (MQ=255)

                                                                            gAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACg                >  1:2564116/1‑91 (MQ=255)

                                                                               tCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGAt             <  1:2224385/91‑1 (MQ=255)

                                                                               tCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGAt             <  1:1576227/91‑1 (MQ=255)

                                                                                   cacCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATtgtg         >  1:2257770/1‑91 (MQ=255)

                                                                                   cacCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATtgtg         >  1:1354876/1‑91 (MQ=255)

                                                                                    acCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTgtgt        >  1:2560676/1‑91 (MQ=255)

                                                                                    acCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTgtgt        >  1:593874/1‑91 (MQ=255)

                                                                                     ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa       >  1:4034186/1‑91 (MQ=255)

                                                                                     ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa       >  1:4034197/1‑91 (MQ=255)

                                                                                     ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa       >  1:225264/1‑91 (MQ=255)

                                                                                     ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa       <  1:1042056/91‑1 (MQ=255)

                                                                                      cAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTAt      <  1:1779702/91‑1 (MQ=255)

                                                                                      cAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTAt      >  1:2691123/1‑91 (MQ=255)

                                                                                       aaaTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATc     <  1:106888/91‑1 (MQ=255)

                                                                                        aaTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCt    >  1:1074026/1‑91 (MQ=255)

                                                                                        aaTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCt    <  1:3082249/91‑1 (MQ=255)

                                                                                         aTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCtt   <  1:1553905/91‑1 (MQ=255)

                                                                                          TAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCtta  >  1:1101651‑M1/1‑91 (MQ=255)

CGTTTTAGGGTTGATAGATAAAATCATAATACTATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTA  >  USA300TCH1516_ALE/2429338‑2429518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.