BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2429428 =	84 (0.850)	5 (0.050)	5/152	NT	5.4%	coding (219/948 nt)	lytR_2	Transcriptional regulator LytR
*	?	USA300TCH1516_ALE	2429460 =	94 (1.010)	5 (0.050)	5/152	NT	5.4%	coding (187/948 nt)	lytR_2	Transcriptional regulator LytR

Only 100 of 131 total aligned reads displayed.

ATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTACATA  >  USA300TCH1516_ALE/2429371‑2429550

 gatacacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAAGCGATTGTGAATGGATCACCATCGTTTAAAc                                                                                          >  1:1294745‑M1/57‑91 (MQ=255)

  cACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACt                                                                                         <  1:1744407/91‑1 (MQ=255)

  cACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACt                                                                                         <  1:1379108/91‑1 (MQ=255)

    cTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCa                                                                                       <  1:887294/91‑1 (MQ=255)

     tACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCAc                                                                                      <  1:2399462/91‑1 (MQ=255)

     cacaatccgttagatcgcaatcattcagaattaagagataaaaaagtgagttTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCAc                                                                                      >  1:323602‑M1/53‑91 (MQ=255)

      aCGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACt                                                                                     >  1:2269689/1‑91 (MQ=255)

        gCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACttt                                                                                   >  1:2539597/1‑91 (MQ=255)

               gCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtct                                                                            <  1:287480/91‑1 (MQ=255)

                ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                                                           <  1:1392871/91‑1 (MQ=255)

                ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                                                           <  1:1389912/91‑1 (MQ=255)

                ccACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTAtctc                                                                           >  1:911036/1‑91 (MQ=255)

                 cACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATctct                                                                          >  1:2002823/1‑91 (MQ=255)

                 cACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATctct                                                                          <  1:3693460/91‑1 (MQ=255)

                  aCCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCtt                                                                         >  1:2022480/1‑91 (MQ=255)

                  aCCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCtt                                                                         <  1:899314/91‑1 (MQ=255)

                       ttttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTTATTc                                                                    >  1:814376/1‑91 (MQ=255)

                       ttttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTc                                                                    <  1:358804/91‑1 (MQ=255)

                        tttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGGGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCt                                                                   <  1:3295107/91‑1 (MQ=255)

                         ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                                                  >  1:1863605/1‑91 (MQ=255)

                         ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                                                  >  1:1863592/1‑91 (MQ=255)

                         ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                                                  >  1:554502/1‑91 (MQ=255)

                         ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                                                  >  1:554466/1‑91 (MQ=255)

                         ttCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTg                                                                  >  1:3953881/1‑91 (MQ=255)

                           cTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGaa                                                                <  1:1459666/91‑1 (MQ=255)

                              aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                                                             >  1:4102407/1‑91 (MQ=255)

                              aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                                                             >  1:3608968/1‑91 (MQ=255)

                              aCGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGa                                                             >  1:4102262/1‑91 (MQ=255)

                                    aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGACTGATTGCGa                                                       >  1:3972633/1‑91 (MQ=255)

                                    aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGACTGATTGCGa                                                       >  1:3972822/1‑91 (MQ=255)

                                    aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGACTGATTGCGa                                                       >  1:3973014/1‑91 (MQ=255)

                                    aGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGa                                                       >  1:1014325/1‑91 (MQ=255)

                                      cATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATc                                                     >  1:2199431/1‑91 (MQ=255)

                                      cATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATc                                                     >  1:1013829/1‑91 (MQ=255)

                                      cATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATc                                                     >  1:1014479/1‑91 (MQ=255)

                                        tCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTa                                                   <  1:1109214/91‑1 (MQ=255)

                                        tCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTa                                                   <  1:2380022/91‑1 (MQ=255)

                                        tCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTa                                                   >  1:2053015/1‑91 (MQ=255)

                                         cTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTACACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTaa                                                  >  1:3098273/1‑91 (MQ=255)

                                          tGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAAc                                                 >  1:658387/1‑91 (MQ=255)

                                          tGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAAc                                                 >  1:1077245/1‑91 (MQ=255)

                                           gAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACg                                                >  1:2564116/1‑91 (MQ=255)

                                              tCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGAt                                             <  1:2223841/91‑1 (MQ=255)

                                                 acacCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATtgt                                          >  1:3263444/1‑91 (MQ=255)

                                                  cacCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATtgtg                                         >  1:1354876/1‑91 (MQ=255)

                                                  cacCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATtgtg                                         >  1:2257770/1‑91 (MQ=255)

                                                   acCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTgtgt                                        >  1:593874/1‑91 (MQ=255)

                                                    ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa                                       >  1:225264/1‑91 (MQ=255)

                                                    ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa                                       >  1:4034197/1‑91 (MQ=255)

                                                    ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa                                       <  1:1042056/91‑1 (MQ=255)

                                                    ccAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTa                                       >  1:4034186/1‑91 (MQ=255)

                                                     cAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTAt                                      >  1:2691123/1‑91 (MQ=255)

                                                     cAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTAt                                      <  1:1779702/91‑1 (MQ=255)

                                                      gtttaaacgatggtgatccattcacaatcgctttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATc                                     >  1:1294745‑M2/36‑91 (MQ=255)

                                                       aaTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCt                                    <  1:3082249/91‑1 (MQ=255)

                                                       aaTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCt                                    >  1:1074026/1‑91 (MQ=255)

                                                        aTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCtt                                   >  1:1951890/1‑91 (MQ=255)

                                                        aTAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCtt                                   <  1:1553905/91‑1 (MQ=255)

                                                         TAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCtta                                  >  1:1101651‑M1/1‑91 (MQ=255)

                                                          aaacgatggtgatccattcacaatcgctttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCttat                                 >  1:2586158‑M2/32‑91 (MQ=255)

                                                          AAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCttat                                 >  1:3735778‑M1/1‑91 (MQ=255)

                                                            AGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCttatta                               <  1:3318027‑M1/91‑1 (MQ=255)

                                                              gatggtgatccattcacaatcgctttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTAcc                             >  1:3173492‑M2/28‑91 (MQ=255)

                                                              cGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTAcc                             <  1:1573314/91‑1 (MQ=255)

                                                              cGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTAcc                             >  1:2516151/1‑91 (MQ=255)

                                                              cGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTAcc                             >  1:2516141/1‑91 (MQ=255)

                                                               gATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCa                            <  1:2320433/91‑1 (MQ=255)

                                                                atggtgatccattcacaatcgtttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAg                           >  1:311794‑M2/26‑91 (MQ=255)

                                                                     gAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGtaata                      <  1:3126912/91‑1 (MQ=255)

                                                                     gAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGtaata                      <  1:4154127/91‑1 (MQ=255)

                                                                       aTGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATaaa                    <  1:565081/91‑1 (MQ=255)

                                                                         ggATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATaaaaa                  <  1:4070401/91‑1 (MQ=255)

                                                                         ggATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATaaaaa                  >  1:689650/1‑91 (MQ=255)

                                                                         ggATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATaaaaa                  >  1:1858512/1‑91 (MQ=255)

                                                                          gATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAt                 <  1:2692636/91‑1 (MQ=255)

                                                                           aTCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAtt                >  1:854269/1‑91 (MQ=255)

                                                                           aTCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAtt                >  1:855484/1‑91 (MQ=255)

                                                                            tCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAttt               <  1:935387/91‑1 (MQ=255)

                                                                             cACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAtttt              >  1:1505134/1‑91 (MQ=255)

                                                                             cACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAtttt              <  1:2868721/91‑1 (MQ=255)

                                                                             cACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAAtttt              <  1:2868673/91‑1 (MQ=255)

                                                                               ccATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTag            <  1:3109254/91‑1 (MQ=255)

                                                                                cATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagc           <  1:3906062/91‑1 (MQ=255)

                                                                                cATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagc           >  1:1148586/1‑91 (MQ=255)

                                                                                cATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagc           >  1:1150886/1‑91 (MQ=255)

                                                                                cATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagc           <  1:3575333/91‑1 (MQ=255)

                                                                                cATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagc           <  1:887220/91‑1 (MQ=255)

                                                                                cATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagc           <  1:887033/91‑1 (MQ=255)

                                                                                 aTCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagca          >  1:3047346/1‑91 (MQ=255)

                                                                                  tcgattaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAGAAATTTTagcag         <  1:3209283‑M2/84‑1 (MQ=255)

                                                                                  tCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGGTCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagcag         <  1:3402493/91‑1 (MQ=255)

                                                                                  tCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagcag         <  1:3402557/91‑1 (MQ=255)

                                                                                   cGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagcagc        >  1:3816779/1‑91 (MQ=255)

                                                                                   cGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTagcagc        >  1:771939/1‑91 (MQ=255)

                                                                                    gTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCt       >  1:2127643/1‑91 (MQ=255)

                                                                                    gTTTAAACTCACTTTATTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCt       >  1:3534628/1‑91 (MQ=255)

                                                                                     tttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTa      <  1:3773866‑M2/87‑1 (MQ=255)

                                                                                      ttaAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTAc     <  1:3616665‑M2/88‑1 (MQ=255)

                                                                                       taAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTACa    >  1:2969417‑M2/3‑91 (MQ=255)

                                                                                         aaCTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCtacata  <  1:2053727/91‑1 (MQ=255)

ATCACTACGCTCTCCGCCACCCTTTTTCTTACGATCAGCATCTGAATCGACACCAAATAAAGCGATTGTGAATGGATCACCATCGTTTAAACTCACTTTTTTATCTCTTAATTCTGAATGATTGCGATCTAACGGATTGTGTATCTTATTACCAGTAATAAAAATTTTAGCAGCTACATA  >  USA300TCH1516_ALE/2429371‑2429550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.