| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2434877 | 113 (1.150) | 7 (0.080) | 6/140 | NT | 6.5% | intergenic (+145/+242) | ybbH_3/yifK | putative HTH‑type transcriptional regulator YbbH/putative transport protein YifK |
| ? | USA300TCH1516_ALE | = 2434908 | 101 (1.170) | intergenic (+176/+211) | ybbH_3/yifK | putative HTH‑type transcriptional regulator YbbH/putative transport protein YifK | |||||
TCATTTTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2434779‑2434877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaaacgcaATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCGT < USA300TCH1516_ALE/2434908‑2434819 TCATTTTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAA < 1:3257299/91‑1 CATTTTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAAC > 1:2109586/1‑91 TTTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAA < 1:3278429/91‑1 TTTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAA < 1:3280289/91‑1 TTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAAC < 1:2287681/91‑1 CAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGC > 1:2906559/1‑91 AAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCA > 1:3676419/1‑91 ATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAA < 1:3940519/91‑1 TACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAAC < 1:776722/91‑1 ACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAACT < 1:2423812/91‑1 GCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGC < 1:1409452/91‑1 GCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGC < 1:3960821/91‑1 ATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGT < 1:2258411/91‑1 TTTGATAAGGCCATTCAATTTCTTATATTAATAACAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATAT < 1:3789809/91‑1 AACAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGT < 1:953765/91‑1 CAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCA > 1:3749374/1‑91 CAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCA > 1:2666169/1‑91 CAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCA > 1:1709619/1‑91 CAAACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCA > 1:1709607/1‑91 AACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATA < 1:3904045/91‑1 ACGCAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATAT < 1:94494/91‑1 CAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCG < 1:3350583/91‑1 CAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCG < 1:1705781/91‑1 CAATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCG < 1:1702257/91‑1 AATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCGT < 1:2969217/91‑1 AATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCGT < 1:730330/91‑1 TCATTTTCAAAGCTTACATGTCTTTTATCTTGTATAACATACGCATATGACCAATGATTTGATAAGGCCATTCAATTTCTTATATTAAAAACAAACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2434779‑2434877‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacaaacgcaATTGATATATGGAATGAATCCGTTAATCAACTGCGTTTGTTTTTAATATAAGAAATTGAATGGCCTTATCAAATCATTGGTCATATGCGT < USA300TCH1516_ALE/2434908‑2434819 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |