| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2440041 = | 55 (0.560) | 7 (0.080) | 6/136 | NT | 13.5% | intergenic (+2/+64) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component |
| ? | USA300TCH1516_ALE | 2440099 = | 43 (0.510) | intergenic (+60/+6) | USA300HOU_RS12570/malP | hypothetical protein/PTS system maltose‑specific EIICB component | |||||
AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2440142‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT > USA300TCH1516_ALE/2440099‑2440187 AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑G > 1:2143138/1‑91AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑G > 1:2143281/1‑91AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCAGCGTATA‑‑G > 1:2083600/1‑91 ATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTG > 1:1783834/1‑91 TGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGT > 1:3667628/1‑91 TGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGT > 1:1567587/1‑91 TGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGT > 1:211940/1‑91 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT > 1:3561963/1‑91 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT > 1:3837606/1‑91 GTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCT > 1:3837748/1‑91 TTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTT < 1:1469908/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 1:2220303/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 1:2816717/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 1:2220233/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 1:2220202/91‑1 TGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTT < 1:2220224/91‑1 GAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT > 1:1505953/1‑91 GAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT > 1:1505941/1‑91 AAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCT > 1:3075382/1‑91 AGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAC > 1:4132480/1‑91 ACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCA > 1:792410/1‑91 ACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATT > 1:2495178/1‑91 ACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATT > 1:2495201/1‑91 TCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTTTTTGTACTATTTATCTTCGGACGATTGATCCTCAACCATTTGT > 1:248183/1‑91 CGCAATCATTGTAAATGATCATCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAT > 1:3815714/1‑91 ATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTA < 1:2383435/91‑1 ATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTA < 1:4055475/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC > 1:997579/1‑91 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC < 1:974064/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC < 1:974050/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC < 1:819277/91‑1 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC > 1:998043/1‑91 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC > 1:1432822/1‑91 TGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTAC > 1:1432714/1‑91 TGTGTCTTTTTTTGTATTATTTAGCTTCGGACGATTGATCCTCAACTATTTGTTCAAATCCTTCACGAACTTGTGGTACTGTCATACCTAC > 1:3312318/1‑91 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAGCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT < 1:3311731/91‑1 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTGAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT < 1:3492447/91‑1 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT > 1:62473/1‑91 GTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACT < 1:2298243/91‑1 TGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTA > 1:2031084/1‑91 TCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACA > 1:4006278/1‑91 TTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAAC < 1:2667265/91‑1 TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACT < 1:3512787/91‑1 TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACT < 1:3471848/91‑1 TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACT < 1:3323286/91‑1 TTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACT < 1:3921920/91‑1 TTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT < 1:111522/91‑1 AACAAATGGTTGAGGATCAATCGTCCGAAGATAAATAATACAAAAAAAGACACATCACTATACGCAATCATTGTAAATGATCATCGTATA‑‑GATGTGTCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2440142‑2440041‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT > USA300TCH1516_ALE/2440099‑2440187 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |