New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2440041 =55 (0.560)7 (0.080) 6/136 NT 13.5% intergenic (+2/+64) USA300HOU_RS12570/malP hypothetical protein/PTS system maltose‑specific EIICB component
?USA300TCH1516_ALE 2440099 = 43 (0.510)intergenic (+60/+6) USA300HOU_RS12570/malP hypothetical protein/PTS system maltose‑specific EIICB component

Only 100 of 106 total aligned reads displayed.

GTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT  >  USA300TCH1516_ALE/2440009‑2440187
                                                                                          |                                                                                        
aggatcaatcgtccgaagataaataatacaaaAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttt                                                                                          >  1:3075382‑M1/33‑91 (MQ=255)
  cATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCttttttt                                                                                        <  1:2290417/91‑1 (MQ=255)
    tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt                                                                                      <  1:469758/91‑1 (MQ=255)
    tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt                                                                                      <  1:469296/91‑1 (MQ=255)
    tCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt                                                                                      <  1:241791/91‑1 (MQ=255)
    tCTATGAGCAAAGCTCGTAGATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGt                                                                                      <  1:1333885/91‑1 (MQ=255)
        tGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGtatta                                                                                  <  1:2830394/91‑1 (MQ=255)
          aGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTattatt                                                                                >  1:371715/1‑91 (MQ=255)
           gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt                                                                               <  1:2885394/91‑1 (MQ=255)
           gCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattt                                                                               <  1:2885371/91‑1 (MQ=255)
            cAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTAttattta                                                                              >  1:3287710/1‑91 (MQ=255)
              aaGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATc                                                                            <  1:832214/91‑1 (MQ=255)
               aGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCt                                                                           >  1:308735/1‑91 (MQ=255)
                gCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCtt                                                                          >  1:2948317/1‑91 (MQ=255)
                  tCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCg                                                                        >  1:1141115/1‑91 (MQ=255)
                   cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                       >  1:2282410/1‑91 (MQ=255)
                   cGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCgg                                                                       >  1:623202/1‑91 (MQ=255)
                    gTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGa                                                                      >  1:1049965/1‑91 (MQ=255)
                     tataTCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGAc                                                                     <  1:3068927/91‑1 (MQ=255)
                         tCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGAtt                                                                 <  1:3243401/91‑1 (MQ=255)
                          cATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTg                                                                <  1:3644197/91‑1 (MQ=255)
                             aataaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGGTTGagg                                                             <  1:2604218/91‑3 (MQ=255)
                               taaAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCt                                                           <  1:3740927/91‑1 (MQ=255)
                               aaaaagacacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCt                                                           >  1:3075382‑M2/60‑91 (MQ=255)
                                AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc                                                          >  1:1505941‑M1/1‑91 (MQ=255)
                                AAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTc                                                          >  1:1505953‑M1/1‑91 (MQ=255)
                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                         <  1:2220202‑M1/91‑1 (MQ=255)
                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                         <  1:2220224‑M1/91‑1 (MQ=255)
                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                         <  1:2220233‑M1/91‑1 (MQ=255)
                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                         <  1:2220303‑M1/91‑1 (MQ=255)
                                 AAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCa                                                         <  1:2816717‑M1/91‑1 (MQ=255)
                                  AAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCaa                                                        <  1:1469908‑M1/91‑1 (MQ=255)
                                   agacacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                                       >  1:4132480‑M2/56‑91 (MQ=255)
                                   AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                                       >  1:3837606‑M1/1‑91 (MQ=255)
                                   AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                                       >  1:3837748‑M1/1‑91 (MQ=255)
                                   AGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAAc                                                       >  1:3561963‑M1/1‑91 (MQ=255)
                                     acacatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                                     >  1:792410‑M2/54‑91 (MQ=255)
                                     ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                                     >  1:3667628‑M1/1‑91 (MQ=255)
                                     ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                                     >  1:1567587‑M1/1‑91 (MQ=255)
                                     ACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCa                                                     >  1:211940‑M1/1‑91 (MQ=255)
                                      CACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAt                                                    >  1:1783834‑M1/1‑91 (MQ=255)
                                       acatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAtt                                                   >  1:2495178‑M2/52‑91 (MQ=255)
                                       acatcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCAtt                                                   >  1:2495201‑M2/52‑91 (MQ=255)
                                          tcactatacgcaatcattgtaaatgatcatcgtatagatgtgtcttttTTTGTACTATTTATCTTCGGACGATTGATCCTCAACCATTTGt                                                >  1:248183‑M2/49‑91 (MQ=255)
                                           CTATACGCTGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                               >  1:2083600‑M1/1‑91 (MQ=255)
                                           CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                               >  1:2143281‑M1/1‑91 (MQ=255)
                                           CTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGtt                                               >  1:2143138‑M1/1‑91 (MQ=255)
                                             ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCa                                             <  1:613389/91‑1 (MQ=255)
                                             ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCa                                             <  1:4149933/91‑1 (MQ=255)
                                             ataCGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCa                                             <  1:459070/91‑1 (MQ=255)
                                                cgcaatcattgtaaatgatcatcgtatagtgatgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAAt                                          >  1:3815714‑M2/43‑91 (MQ=255)
                                                  atgatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGc                                        >  1:1993490/1‑91 (MQ=255)
                                                    gatCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCtt                                      >  1:1797527/1‑91 (MQ=255)
                                                      tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                    >  1:4030032/1‑91 (MQ=255)
                                                      tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                    <  1:3156364/91‑1 (MQ=255)
                                                      tCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCa                                    <  1:3156093/91‑1 (MQ=255)
                                                       cATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCAc                                   <  1:1274746/91‑1 (MQ=255)
                                                        aTTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACg                                  <  1:1502779/91‑1 (MQ=255)
                                                           tACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAAc                               >  1:3063016/1‑91 (MQ=255)
                                                             cAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACtt                             <  1:2991934/91‑1 (MQ=255)
                                                              aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCATCCATTTGTTCAAATGCTTCACGAACTtg                            <  1:2701902/91‑1 (MQ=255)
                                                              aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg                            <  1:599838/91‑1 (MQ=255)
                                                              aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg                            <  1:553557/91‑1 (MQ=255)
                                                              aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg                            >  1:1717384/1‑91 (MQ=255)
                                                              aaTGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTtg                            <  1:78333/91‑1 (MQ=255)
                                                                 gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                         >  1:1943454/1‑91 (MQ=255)
                                                                 gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                         <  1:2481174/91‑1 (MQ=255)
                                                                 gATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTgg                         <  1:2481993/91‑1 (MQ=255)
                                                                    tGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                      >  1:2246931/1‑91 (MQ=255)
                                                                    tGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTAc                      <  1:2982017/91‑1 (MQ=255)
                                                                         ataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCa                 <  1:86776/91‑1 (MQ=255)
                                                                         ataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCa                 <  1:1091838/91‑1 (MQ=255)
                                                                         ataGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCa                 <  1:2369491/91‑1 (MQ=255)
                                                                          taGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCAt                >  1:3938686/1‑91 (MQ=255)
                                                                          taGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCAt                >  1:2589227/1‑91 (MQ=255)
                                                                             tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc             >  1:3645139/1‑91 (MQ=255)
                                                                             tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc             >  1:1275014/1‑91 (MQ=255)
                                                                             tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc             <  1:1952371/91‑1 (MQ=255)
                                                                             tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc             <  1:1952435/91‑1 (MQ=255)
                                                                             tGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATAcc             <  1:1952451/91‑1 (MQ=255)
                                                                               atgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta           <  1:4055475‑M2/80‑1 (MQ=255)
                                                                               atgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACcta           <  1:2383435‑M2/80‑1 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac          >  1:997579‑M2/11‑91 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac          <  1:974064‑M2/81‑1 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac          <  1:974050‑M2/81‑1 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac          <  1:819277‑M2/81‑1 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac          >  1:1432714‑M2/11‑91 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctac          >  1:1432822‑M2/11‑91 (MQ=255)
                                                                                tgtgtcttttTTTGTATTATTTAGCTTCGGACGATTGATCCTCAACTATTTGTTCAAATCCTTCACGAACTTGTGGTACTGTCATACctac          >  1:3312318‑M2/11‑91 (MQ=255)
                                                                                 gtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAAGCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctact         <  1:3311731‑M2/82‑1 (MQ=255)
                                                                                 gtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTGAAATGCTTCACGAACTTGTGGTACTGTCATACctact         <  1:3492447‑M2/82‑1 (MQ=255)
                                                                                 gtgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctact         >  1:62473‑M2/10‑91 (MQ=255)
                                                                                  tgtcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACctacta        >  1:2031084‑M2/9‑91 (MQ=255)
                                                                                    tcttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACa      >  1:4006278‑M2/7‑91 (MQ=255)
                                                                                      ttttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAAc    <  1:2667265‑M2/87‑1 (MQ=255)
                                                                                       tttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACt   <  1:3921920‑M2/88‑1 (MQ=255)
                                                                                       tttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACt   <  1:3323286‑M2/88‑1 (MQ=255)
                                                                                       tttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACt   <  1:3471848‑M2/88‑1 (MQ=255)
                                                                                       tttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACt   <  1:3512787‑M2/88‑1 (MQ=255)
                                                                                        ttTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACtt  <  1:111522‑M2/89‑1 (MQ=255)
                                                                                          |                                                                                        
GTCATCTATGAGCAAAGCTCGTATATCATAATAAAAGACACATCTATACGATGATCATTTACAATGATTGCGTATAGTGATGTGTCTTTTTTTGTATTATTTATCTTCGGACGATTGATCCTCAACCATTTGTTCAAATGCTTCACGAACTTGTGGTACTGTCATACCTACTACAACTT  >  USA300TCH1516_ALE/2440009‑2440187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.